RnoINT0123518 @ rn6
Intron Retention
Gene
ENSRNOG00000049033 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:RGD Symbol;Acc:1305912]
Coordinates
chr7:141280459-141280937:-
Coord C1 exon
chr7:141280805-141280937
Coord A exon
chr7:141280583-141280804
Coord C2 exon
chr7:141280459-141280582
Length
222 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
AGCTTGACTCTGCCCTTTAGGTG
3' ss Score
7.57
Exon sequences
Seq C1 exon
AGTGGCTCAGAGTCCGAGCACTAAGATGGACGTTGTCAATCTGGCTAAAATCTTCGGCCCTACGATAGTTGCCCACACTGTGCCCAATCCAGATCCAGTGACGATGTTCCAGGACATCAAACGCCAGCTCAAG
Seq A exon
GTAGGGGCTCATGTGTGCACACAGATGCAGAAGGTCTGAGCTTTGCACTAACATGGCATAGTGACACAGTAAGCCGTGTATGGCGAGCACATGCAATGGCCGCTGTCCCAGGAGGGTCACCCCAGCCTGGTCTACATTTCAAGTTCTAGGCAAGCCTGGGCTGCAGAGTGAGACTGAGAAACAACGAGGATTACACGCAGTAAGCTTGACTCTGCCCTTTAG
Seq C2 exon
GTGGTGGAGCGCCTGCTCTCTCTGCCCCTGGAGTACTGGAATCAGTTCATGATGGTGGAACAAGAGAACATGGACTGCCACCGCGGCAATGGGAGCTCAACACCACGGACACCAGACATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049033:ENSRNOT00000071885:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.369
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(20.5=68.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAGAGTCCGAGCACTAA
R:
TTAATGTCTGGTGTCCGTGGTG
Band lengths:
252-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]