GgaINT1023217 @ galGal4
Intron Retention
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:341724-342136:+
Coord C1 exon
chrLGE22C19W28_E50C23:341724-341856
Coord A exon
chrLGE22C19W28_E50C23:341857-342000
Coord C2 exon
chrLGE22C19W28_E50C23:342001-342136
Length
144 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGCTCATGGTGTTTCTGTAGGTA
3' ss Score
8.77
Exon sequences
Seq C1 exon
AGTGGCTCAGAGCCCTGACACCAAAATGGACGTTAACAACTTGGCCAAAGTCTTTGGCCCCACGATAGTTGCCCATGCAGTGCCTGATCCTGACCCGATGACGCTCCTGCAGGACACAAAGCGGCAACCCAAG
Seq A exon
GTAGGTGAGCAGGAAGAGCTGCTGTGGGCAAATGGATTCCATTTAAAAAATCCCACCTTGAGGGAGCTGAGGTGATGCCTGCCCGGTGTATGTGTCATGGCTGTGTGCTGTTCCTAATGTTGGCTGCTCATGGTGTTTCTGTAG
Seq C2 exon
GTAGTGGAGCGGCTTCTGCTGCTGCCTATGGAGTACTGGAGCCAGCTTATGATGGTGGAGCAAGAAAACATTGACCCAGTGCATGTAATTGAGAACACCAATGCCTATTCCACTCCCCAGACGCCAGATGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271:ENSGALT00000010135:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(20.5=68.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGACACCAAAATGGAC
R:
TTAACATCTGGCGTCTGGGGA
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]