DreINT0123828 @ danRer10
Intron Retention
Gene
ENSDARG00000015460 | racgap1
Description
Rac GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1917]
Coordinates
chr23:33834820-33836627:-
Coord C1 exon
chr23:33836495-33836627
Coord A exon
chr23:33834950-33836494
Coord C2 exon
chr23:33834820-33834949
Length
1545 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
CTTTTTTCTTTCTTTCTCAGGTG
3' ss Score
13.08
Exon sequences
Seq C1 exon
GGTGGCCCAAAGCCCCGCTACAAAGATGGACATCACCAATCTGGCTCGTGTATTTGGACCCACAATTGTAGGCCATGCCGTTTCTAACCCAGAACCAATGACCATCCTACAGGACACAAAACGACAACCGAGG
Seq A exon
GTACGTGTTCATGGATAGTTTCCTATTTACAGCCGGTCACAATCGAACACTACAAAATACATATGAAATGAGATCTAAAATATTTTGAGCTTGTTAGATTTAAACCACTTTCAGAGCTTTGCTAAAGTTCATTGATTTGCTAGTGTAGATGCTTGTGTAATGGAATACATTTGAAAAGCTACAAAGACTACCTACACTCTACCTGCTAACTTCACTCATGACCATTAAAACAAGGTATTCATACTGAACTGCATAGTACCAAAGCATATTATGGTTGAAATTGTATTGGACATGCACTTCCTTTTGAGCATGCTCATAAGCAATTTCATCACAGTGATTACACTTACCAAAGTGATCTTGAGCGTGATGGAGGGGCTCAACAACAAAATCTGAAATACAGTTGAAAGGACAGATGTATTTAAGCTCAATTTTAGGTCCTCCTAGAGCTTTAAAAAATTTATTCAGCTGATCTCTGGGTTTGACTGAAGCACTTTCAGCTTCGCTTAGTATAAATCGGACTAGACCATTAGCATCTCACTCAATATCGTTAGCAATTCACTCAGAAAATATTCGTTGCTGCATAATATTAATATCGCTACGTGCCTAATATTGATTCGTCGCTGTATAATATCGCTGCCTAATATCCCTACGTGCCTAGTAATTATACGTCGCTGCGTAATATCGTTGCCTAATATCGATACGTGCCTAATATTGATGTGTCCCTGCGTAATATTGTTGCCTATTATCACCACGTGCCTAAAATTTATCCATCGCTGCATAATGTTGCCTAATATTGCTATGTGCCTTATATTGATGCGTCGCTGCCCAATATTGTTGCCTAATATTGCTAAGTGCCTAATATTGATGCATCGCTGCGTAATATCGTTGGCTAATATTGCTACGTTACCAATATTGATGTGTCGCTGCTAATATCATTGCCTTATATGATGCCAGAATGAGATTATGGTTCCTTGCCATATCATCCTAGTACATGATGTAACTACAAAGTCTGGCAATAAATAGGAAAATTTTCACTTTTTAGTTGAAAGTACATCAACGCTATGTCTCAGCAACTTCTGGTTCACGCAAACATTAAGCCTTAATTGATTCAAACAAACCGTATCAAAAACATTGCAGTTGATTTAAACATTTAACGCCTATTCTGAGAAAATTACATTTTCTGACCCTAGATCCATTTAAACTTTGTGTAGAGGTCTCCAACCCAATATTAGGACATTTTAAAACGCCATATGTGCTGCTTTTTAATAGCAGAAACAGAACCAAAATATTGAGAGGGGTCCGGATGGGATACTTAACCTAACCCCACCTTTAACCCTCACAGTGACATCATTAGCTCCATTGAGTGCTAATGTCTGGCATTGCATCTCTGAGATATGCAGTCTTGCCTTACATATCCAAGTCTAAATCTAGATATTATTGAAGGCATCCCCATTGGGTCCAGTTTGTAGAAATGCATAAACCTTTTCCTTTGGCATTTGTTCCAATTTTTCAATAGCCACTTTAACTTTTTTCTTTCTTTCTCAG
Seq C2 exon
GTGGTCGAGCGTCTCCTCAGTCTGCCTGTGGAGTACTGGAGTCAGTTTATGATAAGCGACCACGACCATGCTCGCAATGATCACATGATCATCGAGAACGCCAATGTTCACACGACTCCAGATCAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015460:ENSDART00000027959:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.341
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(20.5=68.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGCCCCGCTACAAAGAT
R:
TCTGATCTGGAGTCGTGTGAAC
Band lengths:
254-1799
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]