BtaINT0121655 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012784 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr5:30057177-30057552:+
Coord C1 exon
chr5:30057177-30057309
Coord A exon
chr5:30057310-30057416
Coord C2 exon
chr5:30057417-30057552
Length
107 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ACATGTTAGGTGGCTTTTAGGTG
3' ss Score
3.02
Exon sequences
Seq C1 exon
AGTGGCTCAGAGCCCAAACACTAAAATGGATGTTGCCAATCTGGCCAAAGTTTTTGGCCCTACAATAGTTGGCCATGCTGTATCCAATCCAGATCCAGTGACATTGTTACAGGACATCAAGCATCAGCCCAAG
Seq A exon
GTAAGCAGGCATGTTATGTTACATGAACTCATACAACAAAACAGGACAAATTGGTGAAGGTAAGCCCTGAGCGTTGATAGTTCGCTAACATGTTAGGTGGCTTTTAG
Seq C2 exon
GTGGTAGAACGCCTGCTGTCACTACCCCTGGAATACTGGAGCCAGTTCATGATGGTAGAGCAAGAAAACATCGACCCCATGCATGTCATTGAAAACGCAAATGCCTTCTCGACACCACAGACCCCAGATGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012784:ENSBTAT00000016988:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.239
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(20.5=68.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGAGCCCAAACACTAAA
R:
CTGTGGTGTCGAGAAGGCATT
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]