BtaINT0114826 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105657585-105657920:+
Coord C1 exon
chr11:105657585-105657648
Coord A exon
chr11:105657649-105657751
Coord C2 exon
chr11:105657752-105657920
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AGGGTGTCTGTGCCTTCCAGTAT
3' ss Score
5.74
Exon sequences
Seq C1 exon
GCCCTGCCCTGCTGCTGACCAGTGACAGCATAAAACAGCGCCTTGGCTCTGCTGCTCTGGACAG
Seq A exon
GTATGAGGCCTCCACGTGGGAACAGCCTGGCCAAGCCCGGCTTCCTGCTCTCAGGGGGCCCCTGCCCAGCCATGAAATACACCAGGGTGTCTGTGCCTTCCAG
Seq C2 exon
TATCCACGAGTACCGGCTGTCCAGCTGGCTGGGGCAGCAGGAGGACATCCACCGGATCGTGCTCTACCAGGCGGACAGCACACTCACGCCCTGGACCCAGCGCTGCATCCGGCAGGCAGACTGCATCCTCATCGTGGGCCTGGGCGAGCAGGAGCCCACGGTTGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGACCAGTGACAG
R:
AACCGTGGGCTCCTGCTC
Band lengths:
219-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development