RnoINT0114531 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2247634-2248564:+
Coord C1 exon
chr3:2247634-2247697
Coord A exon
chr3:2247698-2248395
Coord C2 exon
chr3:2248396-2248564
Length
698 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
TGCTGCCCTGTGTATTGCAGCAT
3' ss Score
8.98
Exon sequences
Seq C1 exon
GTCCTGTCCTGCTGCTGACCAGTGACAACATCAAACAACGCCTTGGTTCTGCTGCTCTAGACAG
Seq A exon
GTGCGCCCCTGGCCCCCTTGTGGTCTCGAGTGGAGAAGTTTAGCCAACCTCAACTTCTTTCTTAGCTGTCCTGGCATGGTCCTGAGATGGAACTCATTATCCCAGGGTCTTGGTGTCCGCACATAACAGCATGTCCCTAGTCCAGCTATCCTCCCCATATATGTCCTTGGGGACCACTAGAGGTCCAGGAGACAGCAGGCGCCTCTTTGATATACAGGCAGCTCTGCATCTCACTTTCTCTTGAACCCCCAACCTCTGTCCAGCTGCTCAGCTCCAAGCCTCCTCTGCTGCTCTGTGGGAGGGAAGCTAATGAAGGGAGGAGCCTTAGAGCCCATAGAAGGTGAGAGAGGCCAGCAATCAGGAGGCAGAGGTAGGCCAATTTCTCTAAGTTCAAGGCTAGCCTAGCCTACAGAGTGAGTCCCAGACCAGCCAATGCCATCCACTGAGATACTGTTATGAAAAACCAAACATATATATATTTGGGCTTATGAGAGGCCTCAGTGATTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCGGCAACCACATGATGGCTCATGACACCTATAAAGGGATTTGTTGCCCTCTTCTAGTGTGCAGGTGTACATGCAGACAGATCACTCAGAATACACGAATAAATGTTTAAGATTACTTTAAGGGGGTGAGGTGCTGCCCTGTGTATTGCAG
Seq C2 exon
CATCCATGAGTACCGGCTGTCCAGCTGGCTGGGGCAGCAGGAGGACATCCACCGGATTGTGCTGTATCAAGCAGACAGCACACTCACACCCTGGACCCAGCGCTGCATTCGTCAGGCTGACTGCATCCTCATCGTGGGCTTGGGCGATCAGGAGCCCGCACTGGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTGCTGACCAGTGAC
R:
CCAGTGCGGGCTCCTGATC
Band lengths:
222-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]