BtaINT0114830 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105667678-105669780:+
Coord C1 exon
chr11:105667678-105667834
Coord A exon
chr11:105667835-105669663
Coord C2 exon
chr11:105669664-105669780
Length
1829 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTGCCCTGTGTGCCCCCCAGGAC
3' ss Score
10.21
Exon sequences
Seq C1 exon
AGGCTGCGCGCAGGTGGGCATCATCCGGGCTCTGACGGAGTACGGCATCCCCGTGGACATGGTTGGAGGGACGTCCATCGGGGCCTTCATGGGCGCCCTGTACTCGGAGGAACGCAGCTACAGCCAGATCCGCATCCGGGCCAAGCAGTGGGCGGAG
Seq A exon
GTGAGGCCCTGTAGGCGCAGGCCGGCAGGGGCCTGGGGACAGGCGGCCCTGCAGGCAGCCTGCAGCGTGGCTGGGGAGCAGGGAGGGCGCAGCGAGGACTTCGCTGCCAGGGGCGGGGGCTCCGGTGCCTGGTCTTGTGAAGGTGACTGAGGACAGGTTAATGCACCCGCAGTGCGCCCACCAGGGCACCAGTGCTGGGAGGCGGGCGGGGGAGGCCTGGGCCTGGGGGTCTGTGTGGCACAGGCAGGGCAAGGCAGGGCACACAGCTTGAGACCTGCCCGTTCCAATAATTCCTGCAGATTTGGGGCTTCGGGGCTGTCCACTGTTGTCTGGCATCTGGCCTTGAGATATGCAGGCTTGGCGTGTGGGGTAGATAGAGGGGGTTGGGTGTGGACTCTGGAAGGGCTGGGTGGGCCCTGGGCTGTCTCTCTCCCTGGGTGTGTGAGACCCCAAATGTCAGTAAGAAGTACACATTGTGGACACAGTGGGTCCTGTAGTGAACGGGTGCCAGAGGACAGCCCAGAACCTGGGCCCGGGCGGGGCAGAGGGACGGCAGGGGAGGGGCACATCACCCGCCCTCCTAAGGGCTCTGTCCAGGGGACGGGTGCTTCCCCCGCCCTCCTAAGGGCTCTGTCTGGGGAGGGGCACCTCCTCTGCCCTCCTGAGGGCTCTGTCTGTCTGGGGGAGCAGGACAGAGCCCTGGCTGAGGCTGTGAGAGGGCTCGGAAGCGCATCTCATTTTTAAAAGAAAAGGAGCCGGTCGCACTCTGTGCAGAAGCTGTCAGCGCGGGCCATCTGCCCAGTGCACATGTCCCCGAGGCTCTTGTCACTGAGGACAGCCTGTGAGGGCAGTGGCCCCAGGGGACAGTGAGGGTCCATCCTCAGTGAGGGACCAGAGACAACCGGGCAGGTCCCTGTCTTCTTCACCCTGCTGGTGTGGAGGTGTGGGAACAGCCATGGAGCTTTGGGCCTGATGGCCTGCCATCCTGAGTGTGTGCTGGGCCACGCGAGCCTGCTGGGCAGCCCCTGCCGGCCGCCCTGCGGCCCTTGCCTGTGGGCCTGTGGAGGGGCGTGGGGGGCGGTGCTGAGCAGGGGCTTCCTCGGGAGGTAGGGGCTTGTTGGCCACAGAGGAGCCCTGGAATGCTGGGCCACCTGGGTCCCTGTCTCTAAGAGCACGTGTGCTCCTGCTTGTCCTGGTCCCCATGTGAATGCCTGGGCACGTGCCTCCCTCCACCTGCAGCCCCTGCCTGAGCTTTCCCCTCTCCGGTCTGTCTGGGGAGGGAGGAGGCCCCTTCCTCCTCACCCCGAGCCCTGAGGGGTCAGGCGCTCCTGGTCCTGTGCTCACAGGCGGAGCTGTCCAGCCTCAGTGAGGAGGGCGGACCTCTGTTCCACGGTATCCTGGGGCTTCGGCAGTCAGGCCCTCAGTAGGGCCCTGCTTCTGTCGGGGAGATGGAGTGCCTGCCCTGGCACCTGGGCATGGGCAGCAGTGGGCATGCAGCCAGCCCTGGGCCTAGATGGCCTCGTCCCAGCATGCCCAGAGCTGGCCCTTCTGAGCGGGTAGCAAGGGCCCAGTGAGTCAAGCCTGCCAGGGGCCAGCGGCTGCTCCAGGCCCTGCCACTCAGGCTGTGGTGTTTGCTCCCCCCAGGCCCTGGGTGCTTCCAGGAGGCCCCCGTTCTGCTTGCAGGAAGCAGGTGTGCCCGTGTGCCCACTCCCTTCTCCTGACGCAGGCTCTTGGTGGTCCCGCGGGGGGGTTGCTGCCTGTGCCCATAGGCAGGGGTGTGCGCCCCTTTTCCTCTGCAGGGGCTCATGTGTGCCCTGTGTGCCCCCCAG
Seq C2 exon
GACATGATGTCGATGGTGAAGACCATGCTGGACCTGACCTACCCCATCACTTCCATGTTCTCGGGGGCTGGCTTCAACAGCAGCATCTCTAGCGTCTTCAAGGACAGGCAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(31.1=100)
A:
NA
C2:
PF0173417=Patatin=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGTGGGCATCATCC
R:
ATCTGCCTGTCCTTGAAGACG
Band lengths:
262-2091
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development