DreINT0116810 @ danRer10
Intron Retention
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24546279-24546633:-
Coord C1 exon
chr5:24546477-24546633
Coord A exon
chr5:24546396-24546476
Coord C2 exon
chr5:24546279-24546395
Length
81 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TTTCTTTGTTTTTGCTACAGGAT
3' ss Score
10.55
Exon sequences
Seq C1 exon
AGGCTGCTCACAGGTGGGCATCATTCGTGCAATGAGCGAGGCAGGAATCCCTGTGGATCTGATCGGCGGCACTTCCATTGGTTCATTGATAGGAGCTCTATATGCTGAAGAGCGTAGCGTCAGTCGCATGACGGTTAGGGCACGCCAGTGGGCAATG
Seq A exon
GTGAGACCTTTATGTACCGAACACCAGCATTCATACGTGTCAAGACTATCAAGAAGATTTCTTTCTTTGTTTTTGCTACAG
Seq C2 exon
GATTTTGGATCCATATTTAAGAAGATCACCGATTTGACCTACCCGGTGACCTCCATGTTCACTGGAGCATCATTTAACTCCAGCATTGGCACACTCTTCCAGGACAAACAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002:ENSDART00000145061:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(31.1=100)
A:
NA
C2:
PF0173417=Patatin=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCGTGCAATGAGCGAGG
R:
CCGGGTAGGTCAAATCGGTGA
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]