BtaINT0114989 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19406593-19406980:+
Coord C1 exon
chr3:19406593-19406705
Coord A exon
chr3:19406706-19406955
Coord C2 exon
chr3:19406956-19406980
Length
250 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TATTGTGTTATTTCCCATAGGAC
3' ss Score
10.74
Exon sequences
Seq C1 exon
TGGAAGCAAGCTGGCCTGCACTTCATGTACCTTTGTTACCTCTGTGGGAGATGCCATGGCTAAGCATTTGGTATTCAACCCTTCTCATAGATCCAGTAGCATCCTGCCACGGG
Seq A exon
GTGAGTAAGAGCGATGGGGTTGGAGGTGGGACTAAGGATGCAGGTCATGGTGAGCCAGGTGCATCTGCTCCTGGCCTAACCCGTCCGCTGCTGAGACACACCTCACCAAGTTGGAAGCGTTCTAACCTGAGATTTATAGAAGGCTGGGAAAGCAGTAGATTTACTTTTTTGGTTAAAATCTCAAGAACTGTCTCAGGAGGGTTTGTTTCTTCACCAAGCTAACATTTTTTTATTGTGTTATTTCCCATAG
Seq C2 exon
GACTCACTTGGATATCTCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289:ENSBTAT00000033883:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGGCCTGCACTTCAT
R:
CTTGAGTGAGATATCCAAGTGAGT
Band lengths:
132-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]