GgaINT0140055 @ galGal4
Intron Retention
Gene
ENSGALG00000024479 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr25:2082426-2083274:+
Coord C1 exon
chr25:2082426-2082538
Coord A exon
chr25:2082539-2083249
Coord C2 exon
chr25:2083250-2083274
Length
711 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TCTTTGTCTTTTTCTCGCAGGGC
3' ss Score
11.48
Exon sequences
Seq C1 exon
TGGTGTGAAGCTGTGCTGCTCCTCCTGCCTCTTTGCGTCATCGGAGGGTGATATGATGGCCAAGCATTTGGTCTTCAACCCATCACACGAGTTCAGCAACATTATTTTCCGAG
Seq A exon
GTAGGAGTTTGGAAAAGGAGCAGGAAAGTTGAAATAATTAACGAAAGACATAATCCATGAGTTCCTTGAGCCCAGCTCAAACACAGCCAGTTGGCGGAGCACTCACTGACTGCTGAGCTTCAGTAAAATGCAGCTTGGGGACCTTCTGTAGTTGCTGAATGTGTCACAATTGTTATGGAGATGAGAGCTAAGCCTCCAGTGAGGCTGTCAGCCTGAGCTGAGCTGTGCAGCTTAGATCTCAGGAGATATTCCCAGGAAGGAACAATGCAGAGGGCTTCAGCGAGCTGCTCTGTTCCTTTGAGACATCATTGTACCTCTGTGACACGGAGAGGCCTGGAGCAGCTGCTGATGTTGGGCTTTGAATGGGGCCTGGAGCTGCTGTTCCAGCCATTTGTTGCCATTAGCGCAATTTGCAAAACTGAAGGTCCTTGCCTGCAGCGATCTGGCTGAAGTTGAGCTTTCCTAGCCAAACTCCTGGTGTTACTTCTGATGGATTTTGGTTTTGGTGGGGTTTCAGTGCTGCTACTGGGCAGTTCTCATTGGTTTGGATGTGGGTGCAAGACCTCTTGGGGAAGGGAGGGGGTTGAATGAGCGTCGGGTTCCTGCAGCAGATGGGGATGCCTGAGCCTTATCTCTGTGAGAGCGCTGTGTGTTTGCACTGACTTCTTGCTTGTTTGCAAAGCCACAACCGTCTTTGTCTTTTTCTCGCAG
Seq C2 exon
GGCCTACTTGGATATCACATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479:ENSGALT00000041392:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]