HsaINT0128799 @ hg38
Intron Retention
Gene
ENSG00000143442 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr1:151406607-151407023:-
Coord C1 exon
chr1:151406911-151407023
Coord A exon
chr1:151406632-151406910
Coord C2 exon
chr1:151406607-151406631
Length
279 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TGTTGTTTCATTTTCCATAGGAC
3' ss Score
11.27
Exon sequences
Seq C1 exon
TGGAATCAAGCTGGCCTGCACTTCATGTACCTTTGTTACCTCTGTGGGCGATGCTATGGCCAAGCATTTGGTATTCAACCCCTCTCACAGATCCAGCAGCATCCTGCCACGGG
Seq A exon
GTAAGTAGGAGAGAAGGGGATTAGTTGAGCAAGGGGAGGAAAAAAGATACAGGTTCGTACTGTATGCATCAGGAGCATACCTACTTGGCCTCACTCATTCACTGTTGAGATGTGCTGGACCTAATTAGAAACCTTCCGACCTGAAGTTTATATAAAACTGGGAAAGCTGGTCACTGCGAACAGCGTATTTGTATGTAGTAAGTTGAATCCCAGGGCACTGTCTTTGGAGGGCTTATTTTTTCACTGAGCTAACTATTTTTGTTGTTTCATTTTCCATAG
Seq C2 exon
GACTCACTTGGATAGCTCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143442:ENST00000271715:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAAGCTGGCCTGCACTTC
R:
TGAGTGAGCTATCCAAGTGAGT
Band lengths:
133-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development