BtaINT0114995 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19395208-19396333:+
Coord C1 exon
chr3:19395208-19395314
Coord A exon
chr3:19395315-19395995
Coord C2 exon
chr3:19395996-19396333
Length
681 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
GATGTCTTCTTTCTTTATAGTAC
3' ss Score
8.65
Exon sequences
Seq C1 exon
TGACCTCGCCCATCCCAGTGTTTGATCTCCAGGATGGTGGACGGAAGATATGTCCACAGTGTAATGCTCACTTCCGTGTTACTGAAGCTCTGAGAGGTCACATGTGT
Seq A exon
GTAAGTGATGTCACCTGTGATGGGATCCAGCGTAAATGGCTACCGTTCACTGTGTACTTCCTGTAGTCTTGGGAGAGTGTGAGGCAAGGGCTCTGAAATGACTTGGAAGCCTTTTAAAGGGTTATACTCTTGGCCTGTTTTAGAATGAACTCAAAAATATAATAGGAAACATTTAAAGTCCCTCAAATAGATCAGAACATACGTGACCTTAATTCCTTAGTTGGTAGATTTTGAACTGCACAGGAGGACGGGTTTGTTAGATATTCAGAACTTTTTGGCCTCAGTTCATTTTCTATTTATTGTGTCATTGGATAAATCAGGAGCTATTAACCAATTACTAACTCAAGCCTTTCATTTTTTGGTATTAGTCCAGATGCAAAGGTTGGGACTTCTTCCTACCAGGGACCCCAGAACCAGCTTAAACTAGCGAGTGGTTCAAGGATCTAAAACAGGAAGAAGTACAAAGTATGGTGTTTGGAGTGGCATAGATCTATATATAAGTACACACACACAGACACATGAAAAAGAGTGAAACCTGGACATTGTAGAAAACTGCAGGGTGGAAACTAGGTGAGAATACCTAGAACCAAACTGTTACCAAGGAATGTTAGTGGACCTGAGGAGTACATGCATCCAGCCCCCAGGAGAACCAGGATGATCAGATGTCTTCTTTCTTTATAG
Seq C2 exon
TACTGTTGCCCAGAAATGGTTGAATACCAGAAGAAAGGAAAATCTCTGGATTCAGAACCCAGTGTCCCATCAGCAGCAAAGCCCCCATCCCCTGAGAAAACAGCTCCTGTTGCTTCCACTCCCTCTTCTACACCTATTCCTGCTCTGTCACCACCTACCAAAGTACCAGAGCCAAATGAGAATGTGGGTGATGCTGTCCAGACCAAGCTCATTATGCTAGTAGATGACTTCTACTATGGACGGGATGGTGGCACAGTAGCCCAGCTCACAAACTTCCCTAAGGTCGCCACATCTTTCCGATGCCCACATTGTACCAAAAGGCTAAAAAACAACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289:ENSBTAT00000033883:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.460
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTCCAGGATGGTGGACG
R:
GTTTGTGAGCTGGGCTACTGT
Band lengths:
358-1039
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]