HsaINT0128804 @ hg38
Intron Retention
Gene
ENSG00000143442 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr1:151423949-151425061:-
Coord C1 exon
chr1:151424955-151425061
Coord A exon
chr1:151424287-151424954
Coord C2 exon
chr1:151423949-151424286
Length
668 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
TCAGATGTCTTTCTTTATAGTAC
3' ss Score
6.56
Exon sequences
Seq C1 exon
TGACCTCTTCCATCCCAGTATTTGACCTCCAGGATGGTGGACGGAAAATATGTCCACGATGTAATGCTCAATTTCGTGTTACTGAAGCTTTGAGAGGTCACATGTGT
Seq A exon
GTAAGTGATATCACCTGTGATCCAGCTTAAGTGGCTTCTGCCATTTACCTTCATTAATATTGGAAGCTTGTAAGCAGGGGCTCTAAAATGACTGAAGCTTTTTAAAGGGTTACTGTTTCTCTTGGTCTGTTTTTAGAAGAGCTGTGTACTTTGGAATGTGATGGGATACATTTAAAGACCCTCAAATAGATCAGAACATATGTGATCTTACTTTCTTAGTGTGGTAGATTTTGAAACCACACAGGAGAACAGGTTTATAGATAATAAGGACTCAAACCATATTGGCCTCAGTTCATTTTTGTTAATTGTGTCATTGGATGAATCGGGAGCTCTTACTTCCATTTTTTAGCTTTTCATTTTTTGGTATTAGTCCAGATAAAAAGGTTGGAACTTCTTCTTTGCCAGGGAGCTCAGAGCCAAGTTATACTAATGATTAAGGGACCTAAGACAGGCAGGAGGGAGAAATACAAAGTATAGCGCTTGGGTGGCATATGTGGATATACTCTAGAAAAGGAGTAAAACTTGGAAACGCTAAAAAAAACTGAAGGGTGAAAGCTGAATGAGAATACCTGAAACCAAACCGTTAACAAGGAATGGTAGTGAAGTTAAGGAGTTAGCACATTCTAGCCCCCAGGATAACCAGAATGATCAGATGTCTTTCTTTATAG
Seq C2 exon
TACTGTTGCCCAGAAATGGTTGAATACCAGAAGAAAGGAAAGTCCCTGGATTCAGAACCCAGTGTCCCATCAGCAGCAAAGCCCCCATCCCCTGAGAAAACAGCTCCTGTTGCTTCCACACCCTCTTCTACACCTATTCCTGCTCTGTCACCGCCTACCAAAGTACCAGAACCAAATGAGAACGTGGGCGATGCCGTCCAGACCAAACTCATTATGCTTGTAGATGACTTCTACTATGGACGGGATGGTGGCAAAGTAGCCCAGCTCACAAATTTCCCTAAGGTCGCCACATCTTTCCGATGCCCACATTGTACCAAAAGGCTAAAAAACAATATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143442:ENST00000271715:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.466
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGATGGTGGACGGAAAA
R:
TTGTGAGCTGGGCTACTTTGC
Band lengths:
351-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development