GgaINT0139836 @ galGal3
Intron Retention
Gene
ENSGALG00000024479 | POGZ
Description
NA
Coordinates
chr25:1959193-1959846:+
Coord C1 exon
chr25:1959193-1959302
Coord A exon
chr25:1959303-1959648
Coord C2 exon
chr25:1959649-1959846
Length
346 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
CTTTTTTTTCCCTCTTTTAGTAC
3' ss Score
11.18
Exon sequences
Seq C1 exon
TCAGTTCATCTCCAATTCCCACCTTTGATTTGCAAGATGGTGGCAGGAAGGTCTGCCCACGGTGTGATGCTCAGTTCCGAGTCACCGAAGCTTTAAGAGGACATATGTGT
Seq A exon
GTAAGTAACCACTCTGGGATGAACAGTTCACCCTGGGTAAGGGGTTGTGTGAAAGGGAATAAAATGGCAAAGGAGGGCCTTCGTAGGCCTCAAGAACATCCCTCAGGATGTCAGGACCTGAGTTAGATGTCCTGCTGGTGCCAGGATCGTTTTTCAATCCTACTGACAGTAAGCAGAGATCTGAATGTTAAATCTGCATTAATTTTTTCCTTCAGAGTTTCCTGGAGTGCACCTGCCTCCTTTTAGTCCTCGTTAGCCTTTGCCTGTTTGCCCTTAATAGCATCAGTAGTTCTTCCTGAATACTTCTGAATGTGTGGCTTTTTTTTCTTTTTTTTCCCTCTTTTAG
Seq C2 exon
TACTGCTGCCCTGAAATGGTTGAATTCCTCAAGAAAAGAAAATCTCTCGATTCTGAACCAAATATCCAATCTGCAAAGCCTCCATCTCCAGAAAAAACCACAGCTGTTGCTTCCCCGCCCTCTTCTACTCCTATCCCTGCACTGTCCCCACCTGCTAAAGCTCCAGAGCCAAATGAAGGCATGGTTGACTCGTCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479:ENSGALT00000041392:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.818
Domain overlap (PFAM):
C1:
PF0136316=FYVE=PU(46.4=70.3),PF139121=zf-C2H2_6=PU(80.8=56.8)
A:
NA
C2:
PF0136316=FYVE=PD(50.0=42.4),PF139121=zf-C2H2_6=PD(11.5=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCATCTCCAATTCCCACCT
R:
GGACGAGTCAACCATGCCTTC
Band lengths:
304-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]