BtaINT0115664 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101664496-101665536:+
Coord C1 exon
chr11:101664496-101664622
Coord A exon
chr11:101664623-101665358
Coord C2 exon
chr11:101665359-101665536
Length
736 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
CAAGATGGCCTTCCCTGCAGACC
3' ss Score
7.36
Exon sequences
Seq C1 exon
GCGCAGATCCACCTGCTTGGGAACGTCGTGATCTGGGCCTCCGCCAGCCTTGCCACCCTGGTGTACGCCCTGCTGTTCATCTGGTACCTGCTCAGACGCAGAAGGAGAGTCTGCGACCTCCCTGAAG
Seq A exon
GTCTGTGCCTCGGCCCACGCACCTCTCACACCCCATCCCTCTGGTTTGGGCTGGAGCTCCGTGTGCTTCGGGCCACATCAGCAAGCGCAGCCTTGGGCCACTTCTGTGTTTCTGCCCCGAGGGCACTTCTGTCTTTTCCTCAGAGACAGGATGCTATTCTCCAGTCCCCATGTCACCTTCAAGGCTTCTCCAGGGCCATGCAGGTGTCGGGCCTGAATTGTTCCCTGACCCCAGCACCCCTGGAAGTGGCTGATGGAACAGAGCTGCCAGGAGGCACTTGGGGGCTGGTTTGCAAGAACAGAACCCCCCTTAAAACCGTTCTGATACGGGAAAGGAGCCAACGCCCGGGGTGGGCCCCGAAGGCCGCCAGGGGCGGGGAGGTGCCCTCTCTGGGCTCTGCTGAGCTGGTCATTCTCTCCACTAGTCCCGGCTCCTGGGTGGGTGCACGGTGCAGGCCCGCCCCTGCCCACTGAGGAGTGAGACTGAAGACCCGCTGGGAATCAGGAGTCAGCTGGGCCTGGCCCAGTGCTTGAGCATCTCAGGACTGGGACGGCAGGGGCAGCAGAAAGTCTGGGAGGTTCTTAGGACACAGTCTGCTCTTCCTTCAGAGACGGTGGAGGCACTGGGATGGGAGACAGAAAGCAGGGGCCGCGAGTTCACGGGCTCACTTGTGGATGATGAGGCGAGCCTGCCTGGCAGCAGGGAGCCTCCCGGCTCAAGATGGCCTTCCCTGCAG
Seq C2 exon
ACCGCTGGCTGCGCTGGGTGCTGGCCGGGGCTCTGTGCGCCGGGGGCTGGGCTGTGAACTACCTGCCTTTCTTCCTGATGGAGAAGACGCTCTTCCTCTACCACTACCTGCCGGCGCTCACCTTCCAGATCCTGCTGCTGCCCGTGGTCCTGGAGCACATCAGCGACCACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805:ENSBTAT00000014315:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCCACCTGCTTGGGAAC
R:
CTGCACAGGTGGTCGCTGAT
Band lengths:
302-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development