GgaINT0124527 @ galGal4
Intron Retention
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6232676-6233384:+
Coord C1 exon
chr17:6232676-6232802
Coord A exon
chr17:6232803-6233206
Coord C2 exon
chr17:6233207-6233384
Length
404 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
3' ss Seq
GTTTCTCCTGTCTCCTGCAGATG
3' ss Score
12.76
Exon sequences
Seq C1 exon
GCTCAGATCCATCTCCTTGGGAATGTTTGCACCTGGGCTTCAGCTAACATCGCTGCTGTGGTCTACACGTGTCTGTCCCTGTGGTACTTGATACGACGAAGAAGAAAAATCTATGATATTCCTGAAG
Seq A exon
GTCTGATTCCATTGGGGGTGTCTCTTAGTCTGTTATGCTTTAATGGACTCAAAGCCATGGTTTTGTTTTGTTGCTGTCTGCTTGATTATTTTAGCACCTTTTCCTGTTCCCTGACCCTGACATTTTTGCTTGTGGCACACAGATTTTGGTCATTGCTGTGTGACCATAGCCTCTTGAGACTGTATAGGAGCCAGCACAGTGTTTGAGTTATTCCCTGGATGTTAAGAAACCTCCAGGCAGCAGATTTGGACTGTACTGAGACCTTTTGTGATAGACTTAAAGGAGAGACAGATAGTGACTGTGGAGAGAGGTTTATTTCAAACAAACCCTGACCTTTGAGAGACATAAATGTACAGGGCCAGTGCTCCAAGATGTCAGTCAGAGGTTTCTCCTGTCTCCTGCAG
Seq C2 exon
ATGCATGGCAGCTGTGGGTATCAGCTGGGCAGATCTGTGTTGGAGGCTGGGTTGTGAATTACCTGCCCTTCTTCCTGATGGAGAAGACACTTTTCCTGTACCACTACTTGCCTGCCCTCACATTCCAGATTCTCCTGATTCCCATCGTATTACAGCATCTCAGCGATCATCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757:ENSGALT00000005964:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGATCCATCTCCTTGGG
R:
AGATGATCGCTGAGATGCTGT
Band lengths:
299-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]