BtaINT0115671 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101654650-101654889:+
Coord C1 exon
chr11:101654650-101654715
Coord A exon
chr11:101654716-101654795
Coord C2 exon
chr11:101654796-101654889
Length
80 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ACTTCATCCTGTGTCTTTAGCAT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GCCCTTCTCCCCGAGATGGTGGTTTTGGTTGGTGCTGACAGGCGTGGCCTGCTCCTGTGCAGTTGG
Seq A exon
GTGAGTCTGGTGCACTGGGTCTGGGGCGGCAGCCACGGCCTCCACGTGTGTCTCGTCTTGACTTCATCCTGTGTCTTTAG
Seq C2 exon
CATCAAGTACGTGGGTGTGTTCACATACTTGCTGGTGCTCGGGGTTGCTGCCGTCCACGCCTGGCACGTGATAGGAGACCAGACGCTGTCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805:ENSBTAT00000014315:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(8.9=100)
A:
NA
C2:
PF0236613=PMT=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCTCCCCGAGATGGTG
R:
GTTTGACAGCGTCTGGTCTCC
Band lengths:
159-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development