HsaINT1027571 @ hg38
Intron Retention
Gene
ENSG00000130714 | POMT1
Description
protein O-mannosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:9202]
Coordinates
chr9:131509743-131510062:+
Coord C1 exon
chr9:131509743-131509808
Coord A exon
chr9:131509809-131509902
Coord C2 exon
chr9:131509903-131510062
Length
94 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TTTCTGTCATGTCTTTGCAGCAT
3' ss Score
10.2
Exon sequences
Seq C1 exon
CCCTTTTTCTCTGAGCTGGTGGTTCTGGCTAACACTGACAGGGGTCGCTTGTTCCTGTGCAGTGGG
Seq A exon
GTGAGTTTGAGCCTCTGGTCTTGGGCAGTGTCCTCCTCCATCTCCTTATGTTTTCCTGTCTCATGTTAACTCCATTTCTGTCATGTCTTTGCAG
Seq C2 exon
CATCAAGTACATGGGTGTGTTCACGTACGTGCTCGTGCTGGGTGTTGCAGCTGTCCATGCCTGGCACCTGCTTGGAGACCAGACTTTGTCCAATGTAGGTGCTGATGTCCAGTGCTGCATGAGGCCGGCCTGTATGGGGCAGATGCAGATGTCACAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130714:ENST00000372228:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(10.3=100)
A:
NA
C2:
PF0236613=PMT=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGTGGTTCTGGCTAAC
R:
CTCATGCAGCACTGGACATCA
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains