DreINT0117595 @ danRer10
Intron Retention
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50467627-50469958:+
Coord C1 exon
chr5:50467627-50467686
Coord A exon
chr5:50467687-50469864
Coord C2 exon
chr5:50469865-50469958
Length
2178 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
ATTTTTTTTCTTTTTTTCAGAGT
3' ss Score
11.45
Exon sequences
Seq C1 exon
CTCATTTTTCAAGTGGTTTTGGCTTGTGATCTGTGGGGTCAGCTGTGCATTCGGAATTGG
Seq A exon
GTATGTATAGTTAAAAAAACACAACATGATTTTTTTTTAAAAATATCTGCTTTTTGTGATAAGAAGTACTTTTTTGTTTAATATAAAGTCAGCATGGAACTGATGTCTTCTCTATTGTGACAAACACTCATTGGGTACTTTATTATACATCTTGCTAGCTCTGATCCCCCATTGCTTTTCAGAGATGCCCTAATTCTATGTGGCGTAGCTTGTGGGAAAGATGCTGAAAACTTTCCTTAGAGATTTTAGTCCATATTGATGCGAAGCTTAACATTTACTGCAGATTTGTTAGGTACACACACACGATATGAATGCCCATGTGCATCACATGCCAAAACTGCTTTATTGGATTGAGATCTGGAGGCGCATTACAGAAAGATCCTAAATTTATAATCTTATCTCTTTGGCAACTGTTGTAATTTCGGTTAAGACCACATTTGTATAAGTGCTATTACAAAACAGCATTTCCTAGATGCGTTATTTTTTTCTTTTACTATAGATTGGAAGGTGGTTTTATAGAAACATCCTAGCTTGACAAAAAAAATTATTTTAGAGCAACCTAACAGCTGTCTTAACTTTAAACTTGAAAGCTAACAAAACAATTGCTTATAATTGCTCTGTCCAACAATGGCATTACATTTATTAATTGGCAAAAGTGAAGAAAGAAAAGACTCCTGGAGGACTTTGAAGATATTACATCTCAATGACCAAATTTTATTAGTAAATATAGACTATCACACACCATATTACTGTTAGCACAGGGACTGCAACCAGCATTATAGAGACCACAGTGTCACGGATCATTAGTGGTTGCCAGAGTTGGTTGTAATGCGTTGATGTATGCTAATTACATTTTTGGGGAACACAGTAATGTAATGAATTACATTTTAAATTTGTGTAATTAGATTACAGTCACTAAAGTCAATGTAATTGCGTTACTAACATTACAACTGTAGTTTTTAGGAGAAAAAATGCTTCTTTTAAATCACGTTTTCCACTGCAGCATGAGATAATAATCATGCGCTTTTATGAACTGCTGGAGAACACTAGCTGAAATGGTTGCTGTCGAGAGTGATTGCTTCAAGTGGAAATACTGACATTTTTTTATTTCATTGAGCGTAAAAACTAAAATATTGCTGTGAAATGCAGTCTGTGTCCAGTCTCTAAAAACTTTCCACTGCTTTTAACTTGACCAGCAACTTGTTTAGGCATTTAAATAGAATCATTCTATGACAATACTTGTCACCAAGGAGGACACTTGGCCAAAAACACGGCAGTCCAACTCGTTCTAAACAGGCTTAATTGAATTTTTGTGCAAAATCGGGAGTGAAGGTATCTTCTGAATGTGAAGTGAAGTGCTGCTTATGGGGCCGTTCACATATCGCGTCTTTTGTGCTTGCAAGTTCGTTATTTCCAATAGTTATGCGTGGCTTGCGAACACACATCGGGAGTGCATATTGGGCGTGCTCACATTTTACAATCATTGGGCGCACCAGTTAAAAACCACGAGTGACACATGACCAGAATTGACAGATCAACTTCATACTTTATATGGAATTTATACATTTCAGTAGACTAATCACCTCAGACAAACACAGAACACCCAAACACTGCAGTGCTTTTTCATACTTTGGATGTCAATGGTTACAGGTATCCAGTTTTCATCTAAATGTCTTTTGTGTTAAAAAAAAGACAACCAGGTTTGTATCAATTGAACGATGAGAAAATTTTAAGTTTTGGGCGATCTCTTTAAGGCTTTTGAATGTGTCAAGCTGCTGTGATCAACACAGCACAACACATCATGTTGTTCAGTGATTATTAAAGTACTCAAAGAGCTGCAGTTTATTTTGTATTTTCATAGGTATATTTTATATGTTTTAAAAGTAACTTCAAAGTGAAGTAATCAGTTTACTTTTTACATGAAGGAATTAGTAATGTCAGATTACAATTTTACAGTAGTTGACTAATTGTAATCTATTACTTTTTTATAGTAACTTACCCAACAATGGTGGTTACAGTTCAAGTGACTAATGCCTTTAGTGCAAGTTTTGTGAATAATCCTAATTGAATTTGTTGTATCATATCTTAAGTTGAGACCTAAGATGAGAAAGTTTCTGTAATATACTTCATAGTGCCCACAAATTTGATTTGTTTTTCCATTTTTTTTCTTTTTTTCAG
Seq C2 exon
AGTAAAGTACATGGGTATGTTCACATACTTTCTACTGCTGAGCCTGGCAGCTGTACACACCTGGCAGCTTATTGGAGATCAAACCTTGAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670:ENSDART00000092002:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(8.2=100)
A:
NA
C2:
PF0236613=PMT=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]