RnoINT0115413 @ rn6
Intron Retention
Gene
ENSRNOG00000010477 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:RGD Symbol;Acc:620078]
Coordinates
chr3:11260591-11260836:+
Coord C1 exon
chr3:11260591-11260656
Coord A exon
chr3:11260657-11260742
Coord C2 exon
chr3:11260743-11260836
Length
86 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ATTTCAGTTGTCTTTTTCAGGAT
3' ss Score
10.21
Exon sequences
Seq C1 exon
CCCTTTCTCAGTGCACTGGTGGCTGTGGCTAATGCTGACCGGAGTCTCTTGTTCCTGTGCGGTTGG
Seq A exon
GTGAGTTAGAGCCCCCGACTTGGATAGCATTCTCCCTGACTGTGGGCTTGTCTGCCTTGGAACCTCATTTCAGTTGTCTTTTTCAG
Seq C2 exon
GATCAAGTACATGGGCATTTTCACCTACTTGCTCGTGCTCAGCATTGCAGCTGTGCATGCCTGGCACCTGATCGGAGACCAGACCTTGTCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010477:ENSRNOT00000015214:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236613=PMT=FE(12.0=100)
A:
NA
C2:
PF0236613=PMT=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTCTCAGTGCACTGGTG
R:
TTTGACAAGGTCTGGTCTCCG
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]