BtaINT0116350 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3970870-3971782:-
Coord C1 exon
chr25:3971699-3971782
Coord A exon
chr25:3970987-3971698
Coord C2 exon
chr25:3970870-3970986
Length
712 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GCCTCGTGTCTCTTACCCAGGAC
3' ss Score
8.4
Exon sequences
Seq C1 exon
AACCTACTAGATGAAATAGCAAGAAGGGAAGAGGAAGTGCAGAAAGTCCACACGCACTCCCAGCAGTACCAGCAGGCTGTCAAG
Seq A exon
GTGAGATGCGACACCCCAGCAGCAGGGCCTCTTCCCCACCATCCCCACCCCCAACCCCCGGGCTGGCCCTGGGGGTGTCCTCAGGCACTGCTGGTGGCTGTGCAAACCGGCACCACCCTTTGGGAAACAAGATGGTACCAGGCATCAAATATCAGAAGGGTTTTCTACTGTTTAAAGCAGTAACTGGGGGGAATTTATCATAAAGGAAAAGATGTGAAAAAATGATAATGTGGGATTAACAAAATCAGTATGAAATAAAAAATTATTTACAATAGCCAAAGAGACAAACTAGAAGTAATCTAAATGTCCAGTATTAGCAGTAGAGACAGCTAGGAAGTTATCATCCAGCTACTTGATGGATGTTTAAGTCATCAAATTGACCCACAGAAGGATTAGGGCAGCATGAAAAAAAGCTTACGGTACAGAGTGAGATGAAGACAGCAGGAAGCCACCTTCTCTGGGCCAGGGGCGGCCTGGAGGGAGGGAGTGCGCTTTGGGGACAAAGGGGTTTGTGGGCCCGTTTTCTTTTGTCTCGTGGGTCGTCCAGGGATGTGGTTGTGTGCCGTTGATGGAGCGACAGTTCTCCAAACCTCCTGGCAGTCAGAGCAAGGTGTGGCTGAGCGGAAGACCTCCGCGGTCAGCCAGAAGGGGCACAGGAACACTTTGGTCTCACCTGCTCTGGTCTGCCCTTTGCCTCGTGTCTCTTACCCAG
Seq C2 exon
GACTACGAGTTGGAAGCAGAGAAACTCAGGTCCCTCCTTGACTTGGAGAATGGAAGGAGCAGCCACGTGAGCAAGCGGGCCAGGCTCCAGTCCCCTGCCACCAAAGTGAGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178:ENSBTAT00000002822:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=NA C2=0.487
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTAGATGAAATAGCAAGAAGGG
R:
CTCTTCCCTCACTTTGGTGGC
Band lengths:
199-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]