GgaINT0013034 @ galGal3
Intron Retention
Gene
ENSGALG00000002201 | Q6PVZ7_CHICK
Description
NA
Coordinates
chr14:14025654-14026279:-
Coord C1 exon
chr14:14026196-14026279
Coord A exon
chr14:14025771-14026195
Coord C2 exon
chr14:14025654-14025770
Length
425 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGGGAACTTCTTCCCACAGGAC
3' ss Score
8.22
Exon sequences
Seq C1 exon
GCGCTCCTTGGTGACATCGCAAGCAAAGAACAGGAGGTGCAAAAGGTCTCTGCCACAGCTCAGCAGTACCAGCAGGCAGTAAAG
Seq A exon
GTAAGGGCTGCAATTCTTCCAGCAGGAGAACACTTCACATCCTACTGAGAGATGTCTATTGAAGGCTTAGGAAGCCTAGTGCCCTTGCTCAAACAGCTGAGGAGCTGAACCCAGGTGATGTCTGTTCCAACATGGACATCACATGGCCATTAGCCAGGATTTCCTGCTTGGGAAAGGAGGTTTCCACTCCACAGCCAGTACTGGTGAGGTGACTGGCAAGTCTGGGCATACTGCTGTGGTCAGTATGCTGATAGGGCTGTAGGACAGGCAGAACCTGCCCAAGAGCCTGCAGGGTGACCCACAGGTCCCACCGGCCTCAGCAACTTGCCCAAAACATGGCCAAGGAAAGACATCAAGAGAGCTTTGGAGCCTGGTAGGGTGATCCAGGGATCTCACCCCTTCCTCCTGGGAACTTCTTCCCACAG
Seq C2 exon
GACTACGAGCTGGAAGCTGAGAAGCTACGGTCCATCCTCGACCTTGAGAATGGACGCAATGGGTACATGAGCAAGAAGCCTAGGCTGCAATCTCCAGCCGCAAAAGTGAAAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002201:ENSGALT00000003446:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.436
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTGGTGACATCGCAAG
R:
TCCTCTTTCACTTTTGCGGCT
Band lengths:
198-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]