RnoINT0116060 @ rn6
Intron Retention
Gene
ENSRNOG00000002930 | Ppl
Description
periplakin [Source:RGD Symbol;Acc:1305511]
Coordinates
chr10:10683825-10684693:+
Coord C1 exon
chr10:10683825-10683908
Coord A exon
chr10:10683909-10684576
Coord C2 exon
chr10:10684577-10684693
Length
668 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACTATCTTTCTTTTACCCAGGAC
3' ss Score
8.63
Exon sequences
Seq C1 exon
AACTTGCTTGATGAGATAGCAAGCATGGAACAAGGGGCGCAGAAGGTCTACGCAGACTCCCAACAGTACCAGCAAGCAGTGAAG
Seq A exon
GTGAGCCATGAACCCTGTCAGAGCACACAGGAGGGGCTTTTGCCTCAAGAGTCACAGAGGAGTCTAGGTGGGTTGCTGGGGAAGTGGGTAGTAGCCATGTGTAGGCCCATCCCTTTGACAAAATAATATGGCATCAGACACCCAATATTATCCAGGAGTTATATTCTTAGAAACGGTTAGCTCTTTGAGGGTGTTTACCCTAAAGGAAAACAAAACAAAGTGAAAACTGATATACACCAAACAAAATGATGTAACAGCTCTAGTTATAACAGGAAAACTAGCCAGCAAAGCCTTATGCAGGAATGTCTGTGTGAATGATCAAATATCTACTTGATGAGCAATGTCAAGGGAGAAGAGCTTAGGATGCACTGTTCACTAAGGAAACAGCATCTGGCCTCCGGGTCTTACAGAAGGCCTGAAGAATCAACTTGGTTTGTGTCCCTGCAATAGTTGGGAATTGCAGGCACATTTTTTGTCTGGATGTTGCTCACTGAGGTAGCACGTACATCACTGTCTTAGTAGCTTTAGGACCTCCTGGTAGCCAGCTCAGGCACAGATGGGAGGAAGCTATGCAAGATTGCTAAACCAGATCGTGGGAGCTTGAAGTCCTTAGAAGGAGCATAAATCATTGTCCCTCCTGACTACTGCACTATCTTTCTTTTACCCAG
Seq C2 exon
GACTATGAGCTTGAAGCAGAGAAGCTAAGGTCCCTGCTGGACCTGGAGAACGGACGGAACAGCCATGTGAACAAGAGAGCCAGGCTGCAGTCTCCTGCTGCCAAAGTGAAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002930:ENSRNOT00000004026:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.564
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGATAGCAAGCATGGAAC
R:
TTCCTTCACTTTGGCAGCAGG
Band lengths:
190-858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]