BtaINT0118589 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019682 | PRRC2A
Description
proline-rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr23:27476265-27476685:-
Coord C1 exon
chr23:27476473-27476685
Coord A exon
chr23:27476360-27476472
Coord C2 exon
chr23:27476265-27476359
Length
113 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
ATGAGTCTTTTTTCCTTCAGTTG
3' ss Score
8.11
Exon sequences
Seq C1 exon
ATGCTTCTGCCCATGGTGGACTCACAGCTGCCTGTGGTGAACTTTGGCTCCCTGCCACCGGCACCACCTCCTGCCCCACCCCCTCTCTCTCTGTTACCTGTGGGCCCTCCTCTGCAGCCCCCCAGTCTGGCTGTGCGGCCCCCACCTGCTCCTGCTACTCGGGTGCTGCCTTCACCTGCCAGGCCCTTCGGCCCTAGCTTGGGGCGAGCAGAG
Seq A exon
GTAAGGTACAGGAGCTGAAGTGCTAGGGAACCCCAAGACTCAGGGGTAAGGATTCAGTATCAGGATGAAGACGTGGAGAGGCAGGACGCTCATATGAGTCTTTTTTCCTTCAG
Seq C2 exon
TTGCACCCAGTAGAACTGAAGCCGTTCCAGGATTATCGAAAACTGAATAGCAACCTTGGGGGACCTGGGTCATCACGGACTCCCCCATCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019682:ENSBTAT00000026236:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCTGTGGTGAACTTTG
R:
AGGTCCCCCAAGGTTGCTATT
Band lengths:
254-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]