MmuINT0023933 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:35286645-35287066:-
Coord C1 exon
chr17:35286854-35287066
Coord A exon
chr17:35286740-35286853
Coord C2 exon
chr17:35286645-35286739
Length
114 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TAAATTGTTTCTCTTTCCAGCTG
3' ss Score
10.07
Exon sequences
Seq C1 exon
ATGCTTCTACCTGTGGTAGACTCACAGCTGCCAGTGGTGAACTTTGGCTCCCTGCCACCAGCGCCACCCCCTGCTCCACCCCCCCTTTCTCTGTTACCTGTGGGTCCTGCTCTCCAGCCCCCCAACCTAGCTGTGCGGCCCCCACCTGCTCCTGCTGCTCGGGTCTTACCTTCACCCGCTAGACCCTTCGCCCCTAGCTTGGGGCGAGCAGAG
Seq A exon
GTAAGGTGTAAAGATCAGTATTTCAAGTTTTTGAAGGATGGCAAGGTATCCAAAGGGAAAAAGGGTAAATGGTTCAGACAGCAAGTTCATAGGGTAAATTGTTTCTCTTTCCAG
Seq C2 exon
CTGCACCCAGTAGAACTAAAGCCTTTCCAGGATTACCGAAAGCTGAGCAGCAACCTTGGGGGTCCTGGGTCGTCACGGACTCCCCCATCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
-Bat2:NM_020027:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGACTCACAGCTGCCAGTG
R:
GCTCAGCTTTCGGTAATCCTGG
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: