RnoINT0118591 @ rn6
Intron Retention
Gene
ENSRNOG00000000852 | Prrc2a
Description
proline-rich coiled-coil 2A [Source:RGD Symbol;Acc:1303025]
Coordinates
chr20:5140472-5140893:-
Coord C1 exon
chr20:5140681-5140893
Coord A exon
chr20:5140567-5140680
Coord C2 exon
chr20:5140472-5140566
Length
114 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
ATAAATTATTTTTATTTCAGCTG
3' ss Score
6.57
Exon sequences
Seq C1 exon
ATGCTTCTACCTGTGGTAGACTCTCAGCTGCCAGTGGTGAACTTCGGCTCCCTGCCGCCAGCGCCACCCCCTGCTCCACCTCCTCTTTCTCTGTTACCTGTGGGTCCTGCTCTCCAGCCCCCCAATCTGGCTGTGCGGCCCCCACCTGCTCCTGCTGCACGGGTCTTACCTTCACCCGCCAGGCCCTTTCCCGCTAGCTTGGGGCGAGCGGAG
Seq A exon
GTAAGGTGTTTGAAGGGTGGGAAGTGGGAGCAAGATTCAGAGTCTGTGTGGGTGTGTCTAAAAGGGTAAGTGGTTCAGACAGAAAGCTCACAGGATAAATTATTTTTATTTCAG
Seq C2 exon
CTGCATCCAGTAGAGCTAAAGCCTTTCCAGGATTACCGAAAGCTGAGCAGCAACCTTGGGGGTCCTGGGTCATCACGGGCTCCCCCATCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000852:ENSRNOT00000001133:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACTCTCAGCTGCCAGTGG
R:
GCTCAGCTTTCGGTAATCCTGG
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]