BtaINT0118634 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001821 | PRRC2C
Description
Bos taurus proline-rich coiled-coil 2C (PRRC2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001206655]
Coordinates
chr16:39901826-39906245:+
Coord C1 exon
chr16:39901826-39902034
Coord A exon
chr16:39902035-39906183
Coord C2 exon
chr16:39906184-39906245
Length
4149 bp
Sequences
Splice sites
5' ss Seq
CAAGTGCGT
5' ss Score
6.68
3' ss Seq
ATCTTATTCTATTCCTATAGGTG
3' ss Score
10.2
Exon sequences
Seq C1 exon
GCCATTTGATGACCAGTCGGCAGGCACAAGTGGTGCTGATCCTGTCAATGGCAGCTCTGCACACCATCAAGAAGGAGCACCTAATGGTACAGGACAAAAGAACTCCAAAGATTCTACTGGGAAAAAAAGAGAAGACCCCAAACCAGGCCCTAAGAAACCCAAAGAGAAAGTGGATGCGTTGTCACAGTTTGATCTCAACAACTATGCAA
Seq A exon
GTGCGTTTCAGATCACCTTTGTCTGTCTGTCTGTTGTCTGTCTGTCCATCTGTTACATTTAAGTAGATACTATAAATAAATAAGTCATCAAAAAAAGAAAGTTGGACTTCAAGGTAGACATAGAGACTGATGATGAATCACAGATAGAGCTCTAATTGAAATAACACCTTTTACCATACCTGTGAGTGCTCGATAAAATTCTAGTTAAAGATAATCCACAGTTTCACTTTTCTTAAGAAAGTAAATTAACCACTCTTCCTTGCTAAACGGATGTGGGGGGACACACAGAAATTCAAATGAAGATGCTTTGTATATATGCTGTGTTTGAAAAGAGAGAAGTGTTAACCTCAATGAATTATGACCTTGAGAAAATTGGTATCTAAGATACGGTAAACACAGAATAAATAATAGGATGGGAGGTAGTGTTGCTGTAGATAAATACTTTCAGAAAGCCATGGAGTGATGGGATGTCAAATGTGAAGGATAACACAGCCAGAAGGAAATGCATGATGAAGACGTTAACAAGGAATCTCTAAGAGTAGACACTTACACAGACGAATATTGGTATTTCCCATTCATTCAGATGAGACTTAAGCTCAAAATACTAAGTAAGATTGAGACTAGATAGTAGTAATGGGAAACTGGTTAGGTACTGTTGTTGTTGCATATTAGAGATGTTGATAAGAGTTTTCTTTCATCTAGTTAATGGTTGTTTATACATATTCAATTTGATTCAGGCCCAGGACCTTGACATTATTATTTATAGACCAGCTATTTTCAAAACGGGGTCTTTAGACCGTCATCATCACCTGGAAGTTTGTGAGAAAAACAAAATCTTAGGCCCTACCCCAGGTCTACTGAATCAGAAACTCTTGGCATGTGAAGCAATCTGTGTTTTAACAAGTTCTCCAGGGGATTCTAATTCCATTGCACACAAACTTGAGAGCGAATTCTGGACTATCATTTTAGGATTCGTGTGGAAAAGAAAGAATCATAACTGTATGTTTTAAGAATGTTTAGATTCTTTAGAACTGTGGTTCTTAACAGGGATGATTCTGTACCCTAGGGGCATATGACAATTTCTAGAGACATTTTTGGTGTTGCAGCTGGTGGCTAGATGTTACTGGCATTTGTATATTTATATATATGTATATATTTGTCAGCCTCAGGTTTTAGCTACAGCACGTGGGCTTCTCTCAGGTTGTGGTGCACCGTCTCTAGAGCTCGAGGTCTCAGTAGTTGGTGGTACACAGGCTTAGTTGCTCCTTGACCTGTGGGATATTAGTTCTCTGACCAGGGATTGAACCACGTCCCCTGCACTGGAAGGTGGATTCTTAACCACTGGGCCTCCAGAAAAGTCACCTACTGACATATTCGTGGGTTTAGGCCCAGAAATGCTGCTAAATGTTTTATAGTGCACAGAACAGCTAACTCACAATGTTAACAGTGCTAAAGTTAGAAAGCTTTGATTTAAAGTAAATCCATAGGAAATTTGGATGCCTGTGTGGTCCATGAGAAGAGAGACTAGCATCCATCTAGACATCACATTTGGAAAATGACAAGTGAAGATAACAGAAGTCCACAGAACATGGCAGATTTGTCTTCTCAAATATTTGTTTACTAGTTTTTCCAAACAACTTCTGGAATATATTTGCAAAGTATTATTAAGACAATATAAAAAGGTAAGTATTGTTTCTGAATTTATAATGAAAATTGAGCTATTAGTTTTAACTTGTTGAAGTTTTGTGTTTGTTTTTTTTTTTTACAACATTTAAAAAATTATTTTTGGCTGTGCTGTGTCTTCATTGCTACAAACACCAGCTTCTCATTGTGATGGCTTCTCATATTGCAGAGCACAGCCTCTAGGCACACGGCTTTAGTAGTTGTGGGGCACTAGTTTAGTTGCCCCACGACATGTGGAATCTTCCTGGACCAAGGATCAAACACGTGTGCCCTGCCTTGGCAGGCGACCTCTCAGCCACTGGACCACCAGAGAAGTCCTTTAATTAATTTTGAGTGATCTTTAGGTTCTTTAAAATAATCTAAATTTCCTAAAATTAGTTCCAAATGTTACATAGCACCAGACAAGAACGTGGTGTTGATCACAAAGTATTGTTCTCATGTCCATAAATGCTTTACACAGTTGAGTGAACTATTCAAAAGGTTTATAAAGGAGCTCTTAGGCAAGAAAATGAAAATAATTAGTGATGGTATGACTATGAGGACAAGCTTTACACACACTTTCTAGTTTAAGTGAAAAACCAAGACAAATTTAGAATTATGAAGAGGTCTCTTGGAGTGCATAACACCCTTTGAAATGTTGAACTAAAACCTTGCATTGAGGTAAGCATATGCTCTGTTTTACACAGTTAATTTCATAAAGGATTTAAAACACAAATAGAAGTGCCACAGATAAATCAGAATCAATGTTTTTCCTTTTAAATCAGATTTTTATTAAACAGACTAACAGTAATAGGTTTGTAAAGAGTGAAAGCCAATCTTAGTATTTTTTTCCCCTGTCAGTATTTCTATGAATGTGAATTTTTAGCTATTTAAAAAGAACTGTTTGCAGGTAGATTCCCTTTGGTCTACTCTGGGTCATATTCTCTTGGCAACCCCGCAAGTTATCACCGTTCTGAATTGTATGTATATCATTGCCAAGCAATTTTTAGTTATGTGTTCCCCAATCACAACATAGTATAGGACTTTATGGTGCAGTGGATAGGAATCTGCCTGCCAGTGCAGAGAACTTGGGTTCAATCCCGGGTCTGGAAAAATCCGACATGCCCTGGAGCAACTAAGCCCATGCACAACAACTACTGAAGCCCTCATAGGGCCTGTGCTCCACAACCAAAGAACAGCGCCTGTTCTCCATAGCGAGAGAAAGCCCACAAACAGCAACAAAAGACCTAGTGCAACCAAAAAATTACAATAAATTCATTAATTATATTAAAAAAGAATCCCTGCTTTAAAAAACCCCATATATTTATATTGTTTGCAAAATTAATTTATTTGAATTGCCTCACCCATTTCTTAAATTCATTGTGTAAGCTTTATACCTGCAACCCAAAATCATATCACCTGGACTGTTTTTATTTTTCTTTTAAATGTTAATGGGTCTAAATTTCTTATACTGACTAGAATGTATAGGGTAATTTAACAAGGTAGAATAATTGTTCGGAGAAGGCAATGGCACCCCACTCCGGTACTCCTGCCTGGAGAATCCCATGGACGGAGGAGCCTGGAAGGCTGCGGTCCATGGGGTTGCTGAGGGTTGGGCACGACTGAGCGACTTCACTTTCATTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGGTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGTGACTTAGCCATAGCAGCAAAATAATTCTTAGACAATGCATTGAAAGTGTATCATGAATTGTTCTTCTGCTGTACATACATTATGATATATGTACATCTATATCACTTTACATTCCCATGGAACTTTAACATATTTCATGTTTTTAACAGCTCCACATTGTAGACAATAGTCTACATAAACTAAAGGCATTAAGAATCAAAAGAGCAGCTTGGCTTGTCAGTAGCATGTTGTTAGCAAATCAGCCTCTTAGAGCTTATTGCGTCCTTTGAAAAGGGGAAACAATAGTAATGCCCACTTCTTAGAATGGTTAGATGCAAATAAGATAAAAGTGCTAACATAGATCTTCATAGCACGATACACATCTTGAGACCAGGAGAGGTAAAGATAAGATAAGATATAAAGATATAAGATCTTTTATAAGATAAAAGACTTTTGATTTTTCTTTTTTAAAAAAAAGGCATTACCACTTCATTGCTTAAGGGAAAAAAAGATGTATACCATTCATAGCAGGTAGTTTTAGGGCTTGATTTATCTATGAAACCTTCAAATTTTAGTAATGGCTATTTTATGGTGTGGGAAATGGGTTATTTTATGAATTATAAGTATTGGATTTTTGCCTTTTTTATTTTATTCCAATCATTATTGGAATAAACGTTTCTGTTTTATCTTTTCAATTGAAAAAAATTTCACTTTAAATCTTATTCTATTCCTATAG
Seq C2 exon
GTGTTGTTATAATTGATGACCATCCTGAAGTAACAGTAGTTGAAGACCCCCAGTCAAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001821:ENSBTAT00000002380:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development