GgaINT0035904 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:4886372-4887867:-
Coord C1 exon
chr8:4887659-4887867
Coord A exon
chr8:4886527-4887658
Coord C2 exon
chr8:4886372-4886526
Length
1132 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TATCTTTCCTCTTACAATAGGTG
3' ss Score
8.87
Exon sequences
Seq C1 exon
GCCATTTGAAGACCAGACAGCAAGCGTGCCTGGTGTTGATCCCAGCAACAACAACTCTTTGCATCAGGAAGAAGGAGGTGTTAATGCAGCAGGACAGAAGACCACCAAGGATGCAAGTGGCAAAAAGAGAGAGGAACCTAAAGCTGGTCCAAAGAAGCCTAAGGAAAAAGTGGATGCTTTGTCCCAATTTGATCTTAATAATTATGCAA
Seq A exon
GTATGTACTGATAAGATACCATGCTAGCAAAAATTTGTAACCGTGCAGCTTTCTTGGATGTATTGCTAGATGTTTGAAAACATACAAAAGATGATGATTTTTTTAAAGCGCATGAATAAATGTATATTTGAGTATTGCTACTTTTGTCGTGTTTAATTAACTTTTTCACATACTAAATATTCGGTTCTAGTTCACTTGCAATGCAATTAGGAAGCAAAGCCTGAGCTTTCATCAAAGCCATCATCTGTGTCTGCTTATTGGGAAATTGTTTCTACCTAAAGCAGTTTGTTCTTAATGAATTTTATTGAGCACTGCGTCCGAAGCTGTTAAAACAGCAACATCTATATCTTTCCTCTTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTAATGAATTTTATTGTGCACTGCGTCTGAAGCTGCCATTAAGCAACATCTATATCTTTCCTCTTACAATAG
Seq C2 exon
GTGTCTTTATCATTGATGATCACCCTGAAGTGACAGTAGTTGAAGACTCCCAGTCTAACTTGAATGATGATGGTTTCACTGAAGTGGTGTCTAAGAAACAACAGAAACGCTTGCAAGATGAAGAGCGCAGAAAGAAGGAGGAACAAACAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290:ENSGALT00000005210:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=NA C2=0.904
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGACCAGACAGCAAGCG
R:
TGTTCCTCCTTCTTTCTGCGC
Band lengths:
349-1481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]