BtaINT0118733 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034368 | PRSS33
Description
protease, serine, 33 [Source:HGNC Symbol;Acc:HGNC:30405]
Coordinates
chr25:2273742-2274497:+
Coord C1 exon
chr25:2273742-2273904
Coord A exon
chr25:2273905-2274225
Coord C2 exon
chr25:2274226-2274497
Length
321 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CTAGCGCCCCCGTCACGCAGGAA
3' ss Score
5.63
Exon sequences
Seq C1 exon
CTTGTGGGCAGCCTCGGGTGTCCAGTCGTATCGTGGGCGGCCGGGACGCCAGGGCCGGAGAGTGGCCGTGGCAGGCGAGCATCCAGCACCGCGGGGCGCACGTGTGCGGGGGCTCGCTCATCGCCCCGCAGTGGGTGCTGACGGCGGCACACTGCTTCCCCAG
Seq A exon
GTCAGCAGGCAGCCGGACCCCACCGAGGGACGGTCCCCTCCCCCTAGGGCTCCGCGTCGAGGTTTGCCAGGCCGGGGCGGGTGGAGCAAGACCCAGGGAAGGTCTTGGATCCCGGGCTGTAAGTGGCCACGTTTGTACAGACCCCCGGGCGATTGGGCAGGGCCCAGCCCTTGCTCCAGCGTCCCACACCCACTGGGACCCCGCGCCCAGACTTCGCGCAGGTCTCACCCCGGGCTCTGAGAGAGAGGGCGACGGGGACGAGCGCTCCTGGGCTGGAGGGGAAGCTGCCTTAATATTAGACCTAGCGCCCCCGTCACGCAG
Seq C2 exon
GAAGGCGCTGCCCGCTGACTACCGCGTGCGCCTCGGGGCGCCGCACCTGGGTCCCAGCTCGCCCCCTGCTCTCCTGGCGCCCGTGCGGAGGGTGCTGCTGCCCCCGGACTACTCGGAGGACGGGGCCCACGGGGACCTGGCGCTGCTGCTGCTGCGCCGCCCAACGCCCCTGAGCACCCGAGTTCAGCCCGTCTGCCTGCCGGAGCCTGGAGCCCGCCCACCGCCCGGCACACCCTGCTGGGTCACTGGCTGGGGCAGCCTCCGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034368:ENSBTAT00000027425:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGGTGTCCAGTCGTATC
R:
AGACGGGCTGAACTCGGG
Band lengths:
346-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]