HsaINT0132974 @ hg19
Intron Retention
Gene
ENSG00000103355 | PRSS33
Description
protease, serine, 33 [Source:HGNC Symbol;Acc:30405]
Coordinates
chr16:2835376-2835962:-
Coord C1 exon
chr16:2835800-2835962
Coord A exon
chr16:2835648-2835799
Coord C2 exon
chr16:2835376-2835647
Length
152 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CCCCCGCTCCTGTCCTGCAGGAG
3' ss Score
11.67
Exon sequences
Seq C1 exon
CCTGCGGGCAGCCCCGCATGTCCAGTCGGATCGTTGGGGGCCGGGATGGCCGGGACGGAGAGTGGCCGTGGCAGGCGAGCATCCAGCATCGTGGGGCACACGTGTGCGGGGGGTCGCTCATCGCCCCCCAGTGGGTGCTGACAGCGGCGCACTGCTTCCCCAG
Seq A exon
GTCAGCGCTCACCGAGGGCCCAGGCGGGGTGTGCAAGGAAGGCAAGGCCCGCAGAGGACCGGGCGTGGCCTGGCAGAGGCGTTGGGGTCGAGGCGGGCTGGAGGGGGTCGAGGACCCGGTGCTGGAAGTAGTCCCCCGCTCCTGTCCTGCAG
Seq C2 exon
GAGGGCACTGCCAGCTGAGTACCGCGTGCGCCTGGGGGCGCTGCGTCTGGGCTCCACCTCGCCCCGCACGCTCTCGGTGCCCGTGCGACGGGTGCTGCTGCCCCCGGACTACTCCGAGGACGGGGCCCGCGGCGACCTGGCACTGCTGCAGCTGCGTCGCCCGGTGCCCCTGAGCGCTCGCGTCCAACCCGTCTGCCTGCCCGTGCCCGGCGCCCGCCCGCCGCCCGGCACACCATGCCGGGTCACCGGCTGGGGCAGCCTCCGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000103355-PRSS33:NM_152891:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCAGTCGGATCGTTGGG
R:
GTAGTCCGGGGGCAGCAG
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)