MmuINT0127460 @ mm10
Intron Retention
Gene
ENSMUSG00000049620 | Prss33
Description
protease, serine 33 [Source:MGI Symbol;Acc:MGI:2661234]
Coordinates
chr17:23834597-23835160:-
Coord C1 exon
chr17:23834998-23835160
Coord A exon
chr17:23834869-23834997
Coord C2 exon
chr17:23834597-23834868
Length
129 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
CCGCCCTGTCTGTTCTGCAGACG
3' ss Score
9.46
Exon sequences
Seq C1 exon
CTTGTGGGCAGCCCCGCATGTCCAGCCGGATCGTTGGGGGCCGGGATGCTCAGGATGGAGAGTGGCCGTGGCAAACAAGCATTCAGCACCGTGGAGCCCATGTGTGCGGAGGGTCACTCATTGCACCCCAGTGGGTGTTGACGGCAGGTCACTGTTTCCCTAG
Seq A exon
GTCAGTGCTTGCTCACTGTTCCAGCTCCAGGAAAGACAGGGGAGTGCTGCCAGGGAGGGGCGGGCAGTGCCGGCTCCTGACAGGCCCATGGTCCAGGTAGTGTCAGCAGCCGCCCTGTCTGTTCTGCAG
Seq C2 exon
ACGGGTATGGCCGTCAGAGTACAGTGTGCTCCTGGGAGCACTGAGTCTGGACGTCAGGTCATCCCACGAGCTCTTGGTTCCTGTGCTGCGGGTGCTGCTGCCTCCTGACTACTCTGAGGACGAGGCCCGTGGTGACCTGGCACTGCTGCAGCTGCGTCACCCAGTGTCCCTGAGCACCCGCATCCAGCCTGTCTGCCTGCCTGCACCAGGGTCCCATCCACCACCAGGGTCTCCATGCTGGGTCACTGGCTGGGGTAGCCTCAGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049620:ENSMUST00000115444:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGCTCAGGATGGAGAGT
R:
GCCTCGTCCTCAGAGTAGTCA
Band lengths:
247-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types