BtaINT0118760 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031454 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr22:53236358-53237253:+
Coord C1 exon
chr22:53236358-53236794
Coord A exon
chr22:53236795-53237096
Coord C2 exon
chr22:53237097-53237253
Length
302 bp
Sequences
Splice sites
5' ss Seq
TAGGTGACT
5' ss Score
3.75
3' ss Seq
CCACCCTGTCCTCACCCCAGCGT
3' ss Score
7.28
Exon sequences
Seq C1 exon
AAAAACATTAAATTGGCAGGCCCCTAGCAAGGACAGTCTCCTCAGATGGACTCTAACCCTTCGGTCTTGGGCTGATTTCTGGGTGGAGACTGTCTCGGATGAGGATCTGAGAGCGAGAGCGTGACTGCGCTCTCAGGCCGGCTTGCAGCAGCCAGATGCGCCGTGGTCCCCATGCTGCTACTCAGCCGCCAGCCGCGAGGGGGCGCCGCAGAGCGCGGAGGCTATCGCGGAGCCCATGGCGTCCCTGGGCGGCCCCCACACCCTCCTGGTCTGGCTTCTGCTCCTTCAACCCTGGCTCACGGAGGCCTCGGAGGATGGGTCGGCTACGTCCTTGCCCCCTCCAGCTCCCTCGGGAGGCGACGCGAAGAACCGCACGGTGGCCCAGCCACCCCTCAGAGGCGCTTCCGAAGTCCCCAAGTTGGTGGAGTTTAGCTTAG
Seq A exon
GTGACTCTCAGCGTTGGGCGTCCAGAGGGGCGGGCTGAGGCGCCAGGGTGGGAGCTGCTGCTCCTCAGGAGCTTGGGAGGATTGGGGTCTGAATCAGCGCAGCCCTGCTGTGGAACCCAAGGCGGGCGGGGGCGGGGGGGGGGGGGGCGGAGGTGAGCCTCGTGTGCGGATCCAAGGCCTGCGGGTTTGGAAGCGCTGCCCTGGAGCCTAAGAGGACATGGCCTTCTTGGCTGTATCGGAGGCTCCCGGGGGTCAGGGCCTGTTTCTCAGAGGTTCTCCTTGCCACCCTGTCCTCACCCCAG
Seq C2 exon
CGTGCGGCCAAGTGTTCCTGAAAATCTTGGGAGGACACGACAGCGAGGAAGGGAAGTGGCCCTGGCAGGTGAGCCTGAGGGTCCGTAACAGACATGTGTGCGGAGCTTCCCTCGTCACAGAGAGGTGGGTGCTGACTGCAGGCCACTGTATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031454:ENSBTAT00000010816:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.0=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCGCGGAGGCTATCG
R:
ACCTCTCTGTGACGAGGGAAG
Band lengths:
354-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]