MmuINT0127505 @ mm9
Intron Retention
Gene
ENSMUSG00000044664 | Prss42
Description
protease, serine, 42 [Source:MGI Symbol;Acc:MGI:2665280]
Coordinates
chr9:110700689-110701372:+
Coord C1 exon
chr9:110700689-110700912
Coord A exon
chr9:110700913-110701215
Coord C2 exon
chr9:110701216-110701372
Length
303 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATT
5' ss Score
7.27
3' ss Seq
TTCTTTTCATCTTCCCTCAGTGT
3' ss Score
10.01
Exon sequences
Seq C1 exon
CCTACGTGATGACATGGCGTCCGGAGGTGGCTCCCTGGGCCTCATAGTCTTCCTCTTGCTCCTTCAGCCAAAGCCCTGCGAGGCCTGGGCAGCCGCCTCTGTACTCTCTACTTCCGGTTTCCCCTCAGGGTTTAGTGAAGCCCCGAGGGACAACCCACCGCCACCCACCCGGGTGCGCATGTCCAAGGCTACCACCCGCTCTCCTTTCATGAACTTTTCCTTAG
Seq A exon
GTAATTTGGTAAGGGTTGTCTGTGGCAAGGGGAGGGCTGGGTCAAGGTCCACACTAAGAGCTAATGACTCCCTGAGAGTCACGGGTGTCGCTCAGGCCACTGTTGTGTAGAGTTCGGTTGCCTTGCCTCTGGGTGGCTTCAGGGGATATGACTGCCTGTATGATGTTGAAGCCTTGAGGGTATGAAGTGCCTGTGGTGTTCAACACTTCTTGGCTATCGTTGGGGGAACGTGTTTTTTTTCTGTGGAAATGCTAACATGAAGAGAGGGCCTAATGCTTATGAGTTCTTTTCATCTTCCCTCAG
Seq C2 exon
TGTGTGGCCAACCCTTTATGAAGATCATGGGAGGGGTAGACGCTGAAGAGGGGAAGTGGCCTTGGCAGGTGAGCGTTCGGGTCAGGCACATGCATGTCTGTGGAGGTTCCCTCATCAATTCCCAGTGGGTGCTGACTGCCGCCCATTGTATTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044664-Prss42:NM_153099:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.0=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCCTCATAGTCTTCCT
R:
AATACAATGGGCGGCAGTCAG
Band lengths:
343-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: