HsaINT1028229 @ hg38
Intron Retention
Gene
ENSG00000178055 | PRSS42
Description
protease, serine 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr3:46833520-46834095:-
Coord C1 exon
chr3:46833882-46834095
Coord A exon
chr3:46833677-46833881
Coord C2 exon
chr3:46833520-46833676
Length
205 bp
Sequences
Splice sites
5' ss Seq
TGCGTGGGA
5' ss Score
-5.8
3' ss Seq
CTACACTATCCTCACCCCAGTGT
3' ss Score
5.23
Exon sequences
Seq C1 exon
ATGTCCTCTGGCGGCGGCTCCCGGGGCCTCCTGGCGTGGCTTCTGCTCCTTCAGCCCTGGCCCGGGCAGAACTGGGCGGGCATGGCGGCGCCACGCCTCCCGTCCCCTCTCCTCTCAGAGGAGGGCGGCGAGAACCCCGAAGCGAGCCCGGCTCCAGGACCTGAAGCGGGCCCCCCACTCAATCTGTTTACGTCCTTTCCAGGTGACTCACTGC
Seq A exon
GTGGGAGGCCCGGAGGCGGAGGTTGGGGCGCCAGGCTGGGGCAGGTGCTACCTGGGAGCCTGCGGTCCGCGGCCCGGGGAATCTGAAGCGTGGCTCGGGAGCCCCGGGGGACATGGCCTCCTTCTTGGCTGTCGTCGGGGCGCCCGGGGGAGTCAACTCCTGTGTCTTTGAGTGAGTTCTTCATCCTACACTATCCTCACCCCAG
Seq C2 exon
TGTGTGGCCGAACCCCTCTGAGAATCGTGGGAGGAGTGGACGCGGAGGAAGGGAGGTGGCCCTGGCAGGTGAGCGTGAGGACCAAAGGCAGGCACATCTGCGGCGGCACCCTGGTCACCGCCACGTGGGTGCTGACGGCAGGCCACTGCATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055:ENST00000429665:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.6=83.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACTGGGCGGGCATG
R:
CTGGAAATGCAGTGGCCTG
Band lengths:
305-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains