RnoINT0118766 @ rn6
Intron Retention
Gene
ENSRNOG00000031971 | Prss42
Description
serine protease 42 [Source:RGD Symbol;Acc:1562548]
Coordinates
chr8:119064351-119065674:+
Coord C1 exon
chr8:119064351-119065186
Coord A exon
chr8:119065187-119065517
Coord C2 exon
chr8:119065518-119065674
Length
331 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATT
5' ss Score
7.27
3' ss Seq
TTCTTTTCGTCCTCACTCAGTGT
3' ss Score
7.41
Exon sequences
Seq C1 exon
AACTTAAGAACATGCATTTATTTTTATTTCCTGCCTCTTGAGTATTTTGCCTGCATGTGTGTGCATGCCTGGTGCCCACAGAGGCCAGAGGACCACACTGGATCCCCTGGAACTGGTGTGAGTCTCCGTGTGGGTGCTGGGAATTGGACTGCAGTCCTTTACAAGAGCATTGAGTGCTCTTAAACATTGAGTCATCTCTCCAGGCCTGGACACTGCTAATTTTCTTTCCACTTGTCCCACAGCTGAGATAGAAGAATAGCCTACAGAAAGAAGTCTGGTGAATGAATCTCGGTTTGAGGTACATTTTTGGAGACCTAGGGCTTCCTCTCTCATTCCCAGAGTTCTGTCCTTACCAGTTCGTCAGGCTCCGCAGGAAGTAAGGGTCCTGAATTGGGAGGTCTCCATCAAGGATGGCTGTCTCCTCTGGCCCAGGCCAGAGTGTGCTCAGTGTGTCAGAAGCCGCGACTCGCCACTGATGCGTCCGACTCACTGGCGCCTCCTGCAGCCCTTTGGGGAGCCCGTTTCTCCTGACAGAATCGAGGGTGGCCACGTGAACCTGGAGAACGGGTGCCATCTTACTGGGAGGGGTTGGGGTGACCTACGTGGTGGCATGGCGTCCGGAGGTGGCTCCCTGGGCTTCGTAGCCTGCCTCTTGCTGCTTCAGCCGAAGCCCTGCGAGGCCTGGGCAGCTGCCTCCATACTCTCTACTTCCGGTTTCCCCTCAGGGCTCAGTGAATCTCCGGGGGAAAACTCACCGCCACCTACCCCGGTGCACACGTCCAAAGTGGCCTCCCAGGGGTCTACCACCCGCTTTCCTTTCACGAACTTTTCCATAG
Seq A exon
GTAATTTGGTAAGGGTTGTCGGTGGCAAGGGGAGGACTGTGTCAAGGCCCTGAGGGGGAGCTAATGACACCCTGAGTCTGAGAGACGTGGGTGTAGCTCAGGCCACGTTGCGTAGAGTCTGATTGCCTTGCCTGTGGCTTCTGTGAGATATGACTGCCATGGGGCGTGTATGACACGGTAGCCTTGAGGGTATGAAGTGCCTGTGGTGGTCAACAGGACAGACATAGCTTACTCCTTGGCTATCGTTGGGGGGTGCACGTGGTGCTTTCCGTGGAAACGCTAGCATGAAGAGAGGGCCTAATTCTTATGAGTTCTTTTCGTCCTCACTCAG
Seq C2 exon
TGTGTGGCCAACCCTTGATGAAAATCATGGGAGGGGTGGATGCGGAAGAGGGAAAGTGGCCCTGGCAAGTGAGCCTTCGGGTCAGACACATGCACGTCTGCGGAGGATCCCTCCTCAACTCCCAATGGGTGCTGACTGCGGCTCATTGCATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031971:ENSRNOT00000051211:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.0=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCGTTTCTCCTGACAGAA
R:
TTCATCAAGGGTTGGCCACAC
Band lengths:
343-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]