BtaINT0118777 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004633 | PRSS48
Description
protease, serine, 48 [Source:HGNC Symbol;Acc:HGNC:24635]
Coordinates
chr17:6523283-6527151:-
Coord C1 exon
chr17:6527121-6527151
Coord A exon
chr17:6523446-6527120
Coord C2 exon
chr17:6523283-6523445
Length
3675 bp
Sequences
Splice sites
5' ss Seq
AGAATGGAC
5' ss Score
-20.48
3' ss Seq
TCTCTCTCCTCTTCCTCTAGTGT
3' ss Score
10.59
Exon sequences
Seq C1 exon
AAAGGACTCATGGGTTCTCACTCTTGTAAGA
Seq A exon
ATGGACATTTGCTTACATAACTCACTATTACTGTTACACCTATCAAAATTAACAATAACTCTTTCATACCACCTAATACCCAGTTAATGATCAAATTTCCTTGATAGTATCAAAATGCTTTCTTAGAGCTGACGTGTTAAATCAGGATCCAAACCCCTCAAGTAATCACAAATGAAGACAACTAGATTTGCAAAACATCAATTAGGTTACAATATTCAGTCATGGCAGTAGGTAAACAAATAGAGGAAGGATTAATTTTTTTTGAAGTGTCCACTTCTAAAATCTGAAAAACGTGTTGCAAGAGGTAGACACCTTACTGTCCTGAGACACAGCACATGCGGCACTTCCCCACCACAACGGTCCCTGTGGCTGAGCTGGCCATATCCCTGCGTGCTCCTCACGCACGAGGGCACAGACGCGAGGGCATCGTACTGCAAGGACACGTAGAGTCCAAAGCCATGAAACTACGGCCTGGTAGGAAAAGATCAGCTGTTCAAATTCTTTGGAAAAAACTTGAGTAGTTTACAGTAGGACAGAATGAAAAGACATGGAGGGTGGCTGGGCCATCCTGCCGGCAGAGGACCAGGGTGAGCATTTGGAACAGCTGCCCTGAGCTCTCGAGACGTCATGGATTCAAAGCCCCCGGCCAGCTCTGGGCTCCAGCTCTGGGCTCCATCTGTCCAAGCACAGCCCCAGAGGTCCTCTCACTCCGCTCTCCTCACTCTTCTCAGATACCTGCAGTGGTTTGCCGAGGCTGTCATAACAAAGTACCACAAAGGGGGCTTCAAGACCAGAAATGTGTTTTCTCAGTTTTAGACGTGAGAAGTCTGAGATTAAGAGGTCAGCAGGGGGGGTTCCTTCAGAGCAACGAGAGGGACAGTCTGATCCAGGTTTCCTGGGCCTTCTTCCCTCTCTGCGTCCGTCTGCATTCAAATGTCCTCTTCTTATAAGGACACCATCATACTGGGTTAAGGCCTATCGTAATGATCTCATTTGGGGCTTCCCAGGTGCTTAGTGGTAAAGAATCCACCTGCCAACGCAGGAAATGGTGTTCGATCTCTGGGTCAGGAAGATCCCTTGGAGAAGGAAATGGCAACTCACTCCAGTATTCTTGCCTGGTGAATCCCATGGAGAGAGGAGCCTGGCGGGCTACAGTCCATGTGTTGGCAAAGAGTCAGACACGACTGAGTGACTCAGCACACATACACACAACCACACTTTAACCTCAATTACCTCTGTTAGAGACACTATCTAAAAATCTGATCACGTTCTAAGGTATTTGGGGTTTGGACTGCAACTATACAACTACAGAGTGGGGAGATATATTTTGGCCCACACAATACCTTTAAAACAATTTCTCACTGTTTAAGCTAGTTTAAGTGAATCTATGTTGCTTATAACTGAATAACAATTACCAAAACAGCTACACTTTCTGGTGTTTTTAAAAATTATTATGGTGGTTTTTTTCAAAATTCATAAAAGTTTAAGATATAAGAGAGCAACAACATGCTTTAACACTACTAAATGCTGCCTCTGCAGACTTAGCACCTATAAACAATGGGGACAGGAAACGTGAAAGGCGCAGAGAGAAATTCTGTGGCAGAGGCAGTACTGAAGCTTTCCATTTCCTAGCAACCAGGAGTGCTGGCCGTTGACAGCTCAAAGGCAAGTCCGTCCCAAGGCTGCCACCAGAGACATCTTTCTCCCCAGGTAATGCCCCCTCCAGGAGGCCACCTGCACCCAGTCCTTTAGAAGTTCAAGGATCCAGCCTTCCCATCTCATTTCAGGGCATATTTGAAGGGCCATCCGAGCTCCAGAGCAACCTGTGGGATTGGCTGAGGCCTCTGTTGCCAATGCATCACGATGCTTTTGCCCAATCCTGTTTCCATTCCCCCCCATCCCCACCAAGGTGTTGATTCTAAGACTCCTTCCCAATAAACTGCACACAAATCTCTGACTTACAGTCTGTTTCCCAGAAAATCTAACTTGCAATACATTCTATGACTAACACTGTAAAGGAAGATGGAAAAAAAAAAATTAGAAAATATTAGCTGGGTTTTGGGTTAATTTCCTCTTTTTCATTTCTTTTGTGAAGAATCCTGCTGATCCTCCATTTCCTTACTAGAGACAGGGCTCCACTCCTTTCCGAGTCCTCCAACCTGCCCTGGGCAGCAGCAACTGTGCCCACCGCTCACCCCTCCCTGCCCCCAGAGGCAAAGGCCCCAGACACTTTGCCCTCCTGGACAGCAGGGGGCACCTCGAGCCCAGTGCCTCTCCTGGGTCCCACAGCTGCACTTCTCAAGTCTGGTCTCTTCAGCTCCTGGCCAGGGTGAGGACCCAGGAGGAGGCGGGTACAGCTGAGGATCCAACCAGGAGGAGAGGCCGGTCCTGCCCTCTTCTGAGGCTGCTCCCCAGCCTGCCTCACCCTGGGAGCCTGAGTCCAGAGAGCAGGAAGTGCTGACACTGAGGAGAGAAATATGGGTCCTGGGGGCTGTGCCTTCCTGCTGTCCCTTCTGCTGGGTGAGCCCCTGAGGTGGAGGTGGGGAGAGGCAGACGGTTTTTGGCTCAAGAAGTTACCATATAGACTACTAGGACACTGCACACATGAGATGTGACTTCTGAAGGGTGTGCCCTGAGAAAGTCTGAGGGGACCCTGTGTGCCAGGCTCCAAACAAATCAGGGCTCTTGGAAATGGCAGTAAACACAAAGATCCCTGCCCTGGGGAGGGGGGCGGGGTTACAGTCAAAGCCTGTAGCAAATATGTAAATTATAAGGCAGGTTAGAAAGCAGTATATACTGTGACCTGAAAGGGACCTCTAGAGTGTCGAGAGGCATTATATTTTAAACAGGGTGGATCAGGAAAGTTTCTGTAAGAAGAAGCTATTGGATCCAAGACTTGGACGAGATGAGTAATTTGGCTAAAAAAATCAAGGAAAATAGTAATTCAAGCAAATGGAACTGAAAGTACAAATGCCCGTCCTTGATTTCAGGAATTATATTGTTCATTTATTTTTCCAGCCCATGGTGATTTAAAGGCAGGATTGGCTGAGGGTAGCAAAAAGATAATAGGTAGCAGCAAAGAAAGAGACACAGATACTGCAAAATGCTAGTACAGTTGAAGAAAACACGACAAAAATAAACAGCGTATACACCTTAAAAACATCTGAAGGCATGAATGCATTTACAACCTCACATACTTGATATTCCTGAAGGAGACGGTGAATCGTTAAGTAAAAGTTGAATTATGTTCCATAAATGCTGCTAAAAAGTCACGTAAGTATGTAATTAGCAAGATTTCTAATAGGTAGATATAAAAATTTGGCCTATAACACGAATCTGAGAGATTGAAGTCACAGAAAGCCCTTCTATTCAGAAAACCTGGATATATAATAGGTGTTGTTGTATATTATATATGTGTGTTGTTATATATTAATGATGCAGTGTATTTGTTTTAGGGTCTTTCATATCCTCTTTCCAAAAGAAAACCCTCCAGTCAGGTGAGTGGTTTCCACTTGGGTCCAAGACTGCTGGGTTTGGAACTGGAATAGGACAGAGAATGGAGGCTAGGGAGGACTCAGGTCCTGGAGATGGATGGGAGTTTGGAGATGATGAGAAGACGGGGATCAGAAGGACAGGACAAGCGGACTTTCACGTTTCTCTCTCCTCTTCCTCTAG
Seq C2 exon
TGTGTGGACGACCTGTATACTCAGGCCGTGTTGTGGGTGGCAAGGATGCTGCCGCCACGCGCTGGCCTTGGCAGGTCAGCCTGCAGCTCTCCAACTCCCACGTCTGTGGGGGCTCCCTCCTAAGTGACAGGTGGATAGTCACAGCAGCACACTGCTTACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004633:ENSBTAT00000006095:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.7=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development