HsaINT1028238 @ hg38
Intron Retention
Gene
ENSG00000189099 | PRSS48
Description
protease, serine 48 [Source:HGNC Symbol;Acc:HGNC:24635]
Coordinates
chr4:151277171-151279958:+
Coord C1 exon
chr4:151277171-151277224
Coord A exon
chr4:151277225-151279795
Coord C2 exon
chr4:151279796-151279958
Length
2571 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTTTCTTCTCTTTCTCTAGTGT
3' ss Score
10.73
Exon sequences
Seq C1 exon
ACATGGGCCCTGCTGGCTGTGCCTTCACGCTGCTCCTTCTGCTGGGGATCTCAG
Seq A exon
GTGAGCGCCAGGGTGGGGTTGAGAAGGCAGAGGCAGAGGATTTTTACTAAAGAGGGCATCACATAGAACAATGTGACACTTCACCCATGGGATGTTAGTTATGAGTAGCACAGCCTGAGAAGGTCCTGAGAGGCTACTATATACCCAGCACCATTCCAATGCTCCCGATTGGAAATAGCAGTACACACACACACCCACAAGATCCCTATCTTCGTGGGACTTATAATCAATGCACATATTAAATGTGTAAATTATAAGGCTTGTTAGAAGGTAATAAGTACTATGAAAGGAAAGGGGCATCTGAAGTACAGGGGCAGGAGTGTTGCAATCTTTAGAAGGGTAGTTAAAGAAGGCCTCACTAAGAAGGAGTCATTTGAGCAGAACTGAAGGGGATAACTAAATTAAGTAAGAGGATCCAGGAAAAGAGCATCTCAAGCAGAGGGAACTGGAAGAGCAAACACTATTCTATGATTTCAGGTATATGCTTGTTCATTTATTTTTCTGGTCCACAGGGATTTAAAGGAAGGGTATACTGGCCAGGCACAGCAGCTCACGCCTGTAATCCCAGCACTTTGGGATGCCAAGGCGGGCAGATCACCTGAGATCAGGAGTTCAAGACCAGCCTGGGCAACATGGTGAAACCCCATCTCTACAAAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAGTCCCAGCTACTCAATAGACTGAGGCAGGAGAAGTGCTTGAGCCTGGAAAGTGGAGGTTGCAGTAAGCCGAGATAGCGCCACTGCACTCCAGCCTTAGCGACAGAGTAAGACCCCGTCCCCCCAAAAAACAGAAAGGGTATGCTGAGAGAGCAAAAAACTTAACAGGTAGCAAAGAAGAAAGATACACAAATACTGCAAAATGCCAATTCAGTTAAACCAAATAGCACAAAAGTAAACAGCTTGCAACCTCAACCGCATCTGAGGGCATCATTGTATTTATAAACTAACATACTTCATATTCCTGATGGTGACCTTGAATCAAGTAAAAGCTAAATTTGAATCTTCATAGAGCATTTTTTTTTTAAGAGACAGAGTCTCACTCTGTCACCCAGGTTAGAGTGCAGTGGTGCAATCATAGCCCACTGCAACCTCAGACTCCTGGGTTCAAGCAATCCTCCCACTCAGCCTCCCTAGTAGCTGGGACTACAGGTGTGGTTGAACCACACCTGTTGTGTTTGTGGCCCAAAAGAAGAAAAAAAAAACCCTGACTAGTATTTAGGAAGTGATTTGTGAAAAGTAAGAAAAGTCTCTAATATAGCACCTGTCTCCAACATTCCTTTTTCTACTTCTGTGCCTTATCTCTGGTCATCCCTAGTTTGAGAGTCCCATGTGACCTAGGGTTTCCTTCTGCCCTGCCTATCTCACCACATTTTTTTCCTTTTCTTTTCAGACAGGGTCTCACTCTCTCGCCCAGGCTGGAGTGCAGTGGCATGATCTAAACTCACCGCATCCTCCACCTCCCGGGCTCAAGCAATCCTCCTGCTTCAGCCTCCCAAGTAGCTGGGACTACAGGCATGCACCATCATGTCAGGCTAATTTCTTTATATTTTTTGTAGAGACGGTGTTTGGCCATGTTGCCCAGGCTGGTTTTGAACTCCTGGACTTGAGCAATCCACCCACCTCAGCCTCCCAAAGTGCTGGGGTTATAGGCGTGAGTCACTGTGCCCAGTCAATCTTACCACTTTCATTTGTCTATTGGTTCATTTATGTAGTCATGCAAATATTCACTGAGAACCTGTCTGTGTGCTAGCTACCAGCTAGAGCTCACACTTGTATGTAGTGTGCTGTTGTCAGTATCCACCTCTCACTGACCAGGGAACATCCACAGATAAAGCTGTGGCCCAAGTATAGGCTGACCTGCCAAGGCCAGCACCCTGCAGCAGCATCTTGGCCATCTACAACACGTCTTGAGTATACAGGTCACCAGCACACTAGAGAAAGAAGAGAAAGAGAAATGTGGAAATCTTTTTCTTTTTCAATTTTTTTTTTAGAGACCTGGTTTCACTATATTGCCCAGGCCTCAAGCAGTTCTCCCACCTCATCCTCCCAAAGCACCAGGATTACAGGCATGAGCCACTATCCCTGGTTTAAAAAAAAAATTTTAAGTTAAATGATATTCCATGTGTGCTGCTAAAGAAGGCAGGTAAGTATGTTTGTGAAGATTCCCACTAATAGGTAGAAGGCATTTGAAAATTTTGGCCTTTAACACCAATCTGGAAAATTTAAATATAAAGGAAGGTTCTCTGTTCAGTGAATCTAGATATTAGATGTGTTACTATGTGTTAATGATACCCTATTTCTTCCTTAGGTTCTTGCTTACACTCTTTTCCCAAAAAGAAAGAGCTACAATCAGGGGAGTGGTCTCCATTTTGAGCCCAAGACTGCTGGGTGTGGAACCAGAATAGGATGGAGTATGGTGTCTAGGGAGGGTTCAGGTCCTAGGAATAGATGGGAGTTTGGGAATGATGATAAGGTGGGGACCAGAGAAACAGGACTCCTAGGTTTCCACATTTCCCTTTCTTCTCTTTCTCTAG
Seq C2 exon
TGTGTGGGCAACCTGTATACTCCAGCCGCGTTGTAGGTGGCCAGGATGCTGCTGCAGGGCGCTGGCCTTGGCAGGTCAGCCTACACTTTGACCACAACTTTATCTGTGGAGGTTCCCTCGTCAGTGAGAGGTTGATACTGACAGCAGCACACTGCATACAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189099:ENST00000455694:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(4.7=27.8)
A:
NA
C2:
PF0008921=Trypsin=PU(18.7=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains