RnoINT0118787 @ rn6
Intron Retention
Gene
ENSRNOG00000024208 | Prss48
Description
serine protease 48 [Source:RGD Symbol;Acc:11436036]
Coordinates
chr2:185301266-185302050:-
Coord C1 exon
chr2:185302006-185302050
Coord A exon
chr2:185301429-185302005
Coord C2 exon
chr2:185301266-185301428
Length
577 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCTGCTCTTCTTTATCTAGTAT
3' ss Score
8.16
Exon sequences
Seq C1 exon
GGGCTTACCAGGGCTCTCTAACCAAACAGAAAAAGCTGCAGTCAG
Seq A exon
GTGAGTAGTCCTCAGACCGGCTTAGGACTGCTGGGTCTGAAACTGGAACTGGGGGTGGGGTAGAGGGATGGCTTGGCGGTTAGGATGACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAACACCCATATGGTGGCTCACAACTGTCTATAACTGTAGTTCCATGGGATCTGATGCCCTCTTCGGGTGTGCAGACAAAACACTCATATAGATAAAGTATCTAAATAAAGTCTTTTTAAAAATGGAATTGGAGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAAACACATGGTGGCTCACAACCATCTGTAATGAGATCTGGTGCCCTCTTCTGGCCTGCAGTCACATATGCAGGCAGAATGCTGTACGTAAAATAAATAAATAAATTACAAAAAAAAAAAATGGAATTGGGAAGGGCAAGGAGTCTCAGGGAGGGCTCAGAGCCTGGAGAAGGATGAGATGGGAGTTTGGGGACAAGGAGAAAACGGAGGAACTTCAATCTGCATAGATCCCCTGCTCTTCTTTATCTAG
Seq C2 exon
TATGTGGACGGCCTGTATACTCTGGACGCATTGTGGGCGGCCAAGGTGCTGCTCTGGGGCACTGGCCCTGGCAGGTCAGCCTGCGGTTTGACAGCACCCACATCTGTGGAGGTTCTCTCATCAGTAACCACTGGGTAATGACGGCAGCACACTGCATAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024208:ENSRNOT00000046286:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.0=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTACCAGGGCTCTCTAA
R:
CAGTGTGCTGCCGTCATTACC
Band lengths:
199-776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]