BtaINT0118788 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27450356-27451160:-
Coord C1 exon
chr25:27450932-27451160
Coord A exon
chr25:27450633-27450931
Coord C2 exon
chr25:27450356-27450632
Length
299 bp
Sequences
Splice sites
5' ss Seq
TGAGTACGT
5' ss Score
4.8
3' ss Seq
CTCCTTCCTCTCCCTGACAGGCC
3' ss Score
11.31
Exon sequences
Seq C1 exon
GGCCTGTCGGGGGCACCGCTGGTGCACGAAGTGAGGGGCACATGGTTCCTGGCTGGACTACACAGCTTCGGAGATGCCTGCCAAGGCCCCGCAAGACCTGCTGTCTTTGCGGCACTCCCCACCTACGAGAACTGGGTCAGCAGTTTGGACTGGCAGGTCTACTTTGCTGAGGAGCCTGAGCCTGAGCCTGAGCCCGAGCCCGAGCCCGGAAGCTGCACAGCTAACATGA
Seq A exon
GTACGTGGCCCTGGGGCCTCCTGCCAACACCTGCCTCCGCAGACCCCTTCTCTGCCGGCCTGGGGCCATCTGTCCCCAGCCACCTCCAGCTGCGGTGGGTGGAGCCATGGACGGAGTCATGGGGATTCAAGTACTGGCTCTTGTCATTGACTGGTTAGGAGCACACCTCTTAACCTGTGCAGCCCTCACTTTTCAAATCTGTCATAGGGGCTCAGGGGCACCTCCTTCCTCTTCCTTTGAGGGAGGGAAGGAAGCTGTGAGCTTGAGACCAACCCCACCCTCCTTCCTCTCCCTGACAG
Seq C2 exon
GCCAGCCAGCCAACTGCTGACAGGTGGCTCTGGGACGCTGCAGTCACAGCAAGGCAACTCCCACGGAACTGCCTCTCTCCCATCCAGCCCCCGACCTTTCCCAGGCAGGTCCTACAGTGCAAAGGGCTCTGGGAAGGAACTTGCCCTGAAAGCTCCACCCTGCAGGACAGGGAGATGTCGCCCGTGGATGCCCCCCACCCAGCTCTGCGGTCCAATGCAGGCGTCCCAAGCTTTTCCTATTCTTCATCCCTCCAGATCCAATGACACCAGCCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.8=58.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTACACAGCTTCGGAGA
R:
GAGCCCTTTGCACTGTAGGAC
Band lengths:
305-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]