MmuINT0127545 @ mm9
Intron Retention
Gene
ENSMUSG00000044139 | Prss53
Description
protease, serine, 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:135028958-135030258:-
Coord C1 exon
chr7:135030042-135030258
Coord A exon
chr7:135029796-135030041
Coord C2 exon
chr7:135028958-135029795
Length
246 bp
Sequences
Splice sites
5' ss Seq
CGAGTATGT
5' ss Score
6.61
3' ss Seq
TTTCTTCCTCTCCTTCACAGGCC
3' ss Score
12.23
Exon sequences
Seq C1 exon
GGCCTCTCTGGGGCGCCACTTGTACATGAGATCAGGGGCACATGGTTCCTGGTTGGACTGCACAGCTTTGGAGACACCTGTCAAAGCTCTGCAAAGCCTGCAGTTTTTGCAGCACTCTCTGCCTACGAGGACTGGATCAGCAATCTAGACTGGCAGGTCTACTTCGCTGAGGAGCCAGAGCCTGAGGCTGAGACTGGAAGCTGCTTGGTCAACTCGA
Seq A exon
GTATGTTCCCTCCTCTTCTTTAGCCTTGGCTCCCACCTAGAGGAAACCCTGCTCTCACTCGTTTTAGCTGCCTGGGGTAGAGGTCAGCAACAGTCAGACCCACATGGACTTTGAAGCAGGGGTCTCAGCTTCTTGGTCTTTTGGTCTCCCACACTCCATAGGGGCCAAGACAGATCTTGCTTCTTCAAAGGAAGTAATAAGGCTATAGGGACGGGGCCAAACTAATTTTCTTCCTCTCCTTCACAG
Seq C2 exon
GCCAACCAGCCAGTTGTTGACTGGTGACTCTAGTTTACTCACAGGACGCCAGAAACGCCAGACAACTCCCACGTCAACACCCAGTTCTACACTCCTGCCCCTCCCCTCCCGGTCTTGTGGTTCCCAGCCCTGAGGCAGGTCCAACAGCTGGCTGGCTGGCTGAGAATGAGCCTGCCCAGAGATGCTTTTCATGTGTGCCATGGCCCCGCCCCCAAGTTCTGCTTTCCAACAGAGATGTCTCCAGTATTCCCTAGCCAATCCTTCAGATATAACCACACCAGTAGCTGTTGTGAAAAAAAAAGTTGTTTTTTTTTTCCTTGGGGGTGGGGGGTTTGGGGAGCAATTTCCTTTTTTAAAACTTAAATTGTTACAAAATAGATTTTAGAAAATAAGTTACAAACTATAGTAAAAGGCTCCCCTGTCACAGGCAGCTTTCGCACCAGTGGTTCTCTCTGATCTGCCTCTCCCTGGGTGAGAATCTGGCTCTCTCTGCATTTTGGCAGAGTCTGGCCCTGGAAAATCATGGTGACAAAGGGTTGGGAAGGAGATCCTTCATCCTTCATGGGCACAGACATGAAGACTACCTCATGCCCTTCTTGGGGGAAAAAGCCAGATTAGGGTCCTCTTCGTGGGAAGAGGAGATGGGGATGCCCAAGCAACTCCTGAGCAAAATGAGGAGAGCAAGCCTCTCCCTGCCTGCCCCATCCTTCAGTCAACTGTTCTTTGGAGACCTGTCATTCAGAGGGAGAGACTGAGGTCTGCAGGCCACTGGGGTGAGGGGTTCGGAAGCGAGGCTGTAGAGGAATCCTCTCTGCTTGCTGCTGGTGCCACTGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139-Prss53:NM_001081268:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.5=61.6)
A:
NA
C2:
PF0008921=Trypsin=PD(0.6=11.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGATCAGGGGCACATGG
R:
GAGGGGCAGGAGTGTAGAACT
Band lengths:
296-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: