Special

MmuINT0127545 @ mm10

Intron Retention

Gene
Description
protease, serine 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:127885841-127886744:-
Coord C1 exon
chr7:127886528-127886744
Coord A exon
chr7:127886282-127886527
Coord C2 exon
chr7:127885841-127886281
Length
246 bp
Sequences
Splice sites
5' ss Seq
CGAGTATGT
5' ss Score
6.61
3' ss Seq
TTTCTTCCTCTCCTTCACAGGCC
3' ss Score
12.23
Exon sequences
Seq C1 exon
GGCCTCTCTGGGGCGCCACTTGTACATGAGATCAGGGGCACATGGTTCCTGGTTGGACTGCACAGCTTTGGAGACACCTGTCAAAGCTCTGCAAAGCCTGCAGTTTTTGCAGCACTCTCTGCCTACGAGGACTGGATCAGCAATCTAGACTGGCAGGTCTACTTCGCTGAGGAGCCAGAGCCTGAGGCTGAGACTGGAAGCTGCTTGGTCAACTCGA
Seq A exon
GTATGTTCCCTCCTCTTCTTTAGCCTTGGCTCCCACCTAGAGGAAACCCTGCTCTCACTCGTTTTAGCTGCCTGGGGTAGAGGTCAGCAACAGTCAGACCCACATGGACTTTGAAGCAGGGGTCTCAGCTTCTTGGTCTTTTGGTCTCCCACACTCCATAGGGGCCAAGACAGATCTTGCTTCTTCAAAGGAAGTAATAAGGCTATAGGGACGGGGCCAAACTAATTTTCTTCCTCTCCTTCACAG
Seq C2 exon
GCCAACCAGCCAGTTGTTGACTGGTGACTCTAGTTTACTCACAGGACGCCAGAAACGCCAGACAACTCCCACGTCAACACCCAGTTCTACACTCCTGCCCCTCCCCTCCCGGTCTTGTGGTTCCCAGCCCTGAGGCAGGTCCAACAGCTGGCTGGCTGGCTGAGAATGAGCCTGCCCAGAGATGCTTTTCATGTGTGCCATGGCCCCGCCCCCAAGTTCTGCTTTCCAACAGAGATGTCTCCAGTATTCCCTAGCCAATCCTTCAGATATAACCACACCAGTAGCTGTTGTGAAAAAAAAAGTTGTTTTTTTTTTCCTTGGGGGTGGGGGGTTTGGGGAGCAATTTCCTTTTTTAAAACTTAAATTGTTACAAAATAGATTTTAGAAAATAAGTTACAAACTATAGTAAAAGGCTCCCCTGTCACAGGCAGCTTTCGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139:ENSMUST00000121394:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.055 A=NA C2=0.077
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=PD(20.5=61.6)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGATCAGGGGCACATGG
R:
GAGGGGCAGGAGTGTAGAACT
Band lengths:
296-542
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types