BtaINT0118790 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27453511-27454256:-
Coord C1 exon
chr25:27454094-27454256
Coord A exon
chr25:27453777-27454093
Coord C2 exon
chr25:27453511-27453776
Length
317 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GCCCCCTCTCCCCCTTCCAGGGA
3' ss Score
12.12
Exon sequences
Seq C1 exon
CATGCGGGCAGCGAGGTCCTGGTCCCCCTGAGCCTCAGGAGGGCAACACAATGCCTGGCGAGTGGCCGTGGCAGGCCAGCGTGAGGAGGCAGGGCATCCACATCTGCAGTGGGTCCCTGGTGGCGGACATCTGGGTCCTCACTGCGGCCCACTGCTTTGAAAA
Seq A exon
GTGAGTCATGTCTGCAGTCAAAAGATTTCTGGCTTTGGGGTGGGTGATTTGTGCCCAAGCCCTGCAAGACTGAGCCCTGCCCCTAGAGTAACAACCGTTTATTTAAAACGTGCCACATGCCGGGAACACACTATCAAGTTAATGTCAAACTTTCGTGGTAGAAGTCTTACAAATCTGACAGCTGAGGTTGGGAGAAGGATGGCCCTTGTTCAAAGCCACAGTTTTGTCCATCTGTCACCTCCTTGGGCTATCTCCTATGGTGTCACTGTCTCTGTTGGCACTCAGTGTTTGGGTCTTGCCCCCTCTCCCCCTTCCAG
Seq C2 exon
GGAGGCAATGACAGAACTGAACTCCTGGTCAGTTGTCCTGGGTTCTCTGCAGCATGAAGGTCTGAGCCCAGGGGCTGAGGAGGTGGGGGTAACGGCTCTGCAGCTGCCCAGGGCCTACAACCACTACAGCCAGGGCTCAGACCTGGCCCTCCTCCGACTCGCCCACCCCATAGCCCACACACCCCTCTGCTTGCCCCGACCTGCCCATCGCTTCCCCTTTGGGACTTCCTGCTGGGCCACCGGCTGGTATCAGCACACCAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.3=76.4)
A:
NA
C2:
PF0008921=Trypsin=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGAGGGCAACACAATG
R:
CCAAAGGGGAAGCGATGGG
Band lengths:
353-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]