MmuINT0127547 @ mm10
Intron Retention
Gene
ENSMUSG00000044139 | Prss53
Description
protease, serine 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:127888934-127889641:-
Coord C1 exon
chr7:127889479-127889641
Coord A exon
chr7:127889200-127889478
Coord C2 exon
chr7:127888934-127889199
Length
279 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CCTTACCCTTCTCCTTTCAGGAT
3' ss Score
13.09
Exon sequences
Seq C1 exon
CATGCGGGCAGCGTGGCCCTGGCCCTCCAGAGCCCCAGGAAGGCAACACATTACCTGGTGAATGGCCCTGGCAGGCCAGTGTGAGGCGACAGGGTGTACACATCTGCAGTGGCTCCTTGGTGGCAGACACTTGGGTCCTCACAGCTGCTCACTGCTTTGAAAA
Seq A exon
GTGAGTCACACTTTTCAGTCTCTCCGTTTGAGGGTGGATTTGTCCCTGTACCTCAAAATGCTTTCCTGCCTCTACAATAATAAGCATCATTCATGGAAAATGTGCCATGGAGCAGAAACACTGCCAGCTTAACCTTAGCAATCTTTCATGGTAGATGCTTTACAAAGGAATAAATGGAGCCTGAGAGGAGGGAACTGTGATGAAACCCATGTGCTCTTCCCCACGGTGCCATGTCTCCGCTGACTCTCAGCTGTCTGGCCCTTACCCTTCTCCTTTCAG
Seq C2 exon
GATGGCCACAGCAGAACTGAGCTCCTGGTCCGTGGTCCTGGGTTCTCTCAAGCAGGAGGGGCAGAGCCCGGGGGCTGAGGAGGTGGGAGTTGCTGCCCTGCAGTTGCCCAAGGCCTATAACCACTATAGCCAGGGATCAGATCTGGCCCTGCTCCAGCTCACCCACCCCACCGTTCAGACAACCCTCTGCTTGCCCCAACCCACCTACCACTTCCCCTTTGGAGCTTCTTGCTGGGCCACTGGCTGGGACCAGAACACCAGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139:ENSMUST00000121394:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.3=76.4)
A:
NA
C2:
PF0008921=Trypsin=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGGGTGTACACATCTGC
R:
AAAGGGGAAGTGGTAGGTGGG
Band lengths:
297-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types