HsaINT0133025 @ hg19
Intron Retention
Gene
ENSG00000151006 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:34407]
Coordinates
chr16:31097954-31099020:-
Coord C1 exon
chr16:31098858-31099020
Coord A exon
chr16:31098220-31098857
Coord C2 exon
chr16:31097954-31098219
Length
638 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CCTTGTCCTTCCCCTTCCAGGGC
3' ss Score
13.47
Exon sequences
Seq C1 exon
CCTGTGGACAGCGTGGCCCCGGCCCCCCCAAGCCTCAGGAGGGCAACACAGTCCCTGGCGAGTGGCCCTGGCAGGCCAGTGTGAGGAGGCAAGGAGCCCACATCTGCAGCGGCTCCCTGGTGGCAGACACCTGGGTCCTCACTGCTGCCCACTGCTTTGAAAA
Seq A exon
GTAAGTCATGGCTGGGGTCAGGCAGGGTCTCCGGCTCTGGGGAGTGGACAATTTGTCTCAAGCCCCACAAGGCTAGTCCCTGCCTCTAGAGTAATAATAAAGAACCATTTACTGAGAATCTGCCATGTACTGGGTACATATTGTCAAGTTAATTGTAACAACCACCTTTCATGGTAGAAGATTTACAAATCAGAAAACTCAGGTTGCAAGGGAATGACCTCGCTTAAAGTCACAGACTGAGGCCGGGCACAGTAGCTCACGCTTGTAATCCCAGCCCTTTGGGAGGCCACGGAGGGAGGATCGCTTGAGCCCAAGAGTTCAAGACTAGCCTGTGCAACATAGCAAGACCATGTCTCTACAAAAACTGTAAAATTAGCCAGGCATGGTGGTGCACGCCTGTAGTCCCAGCTACTCACGAGGCTGAGGTGGGAGGATCGCTTGAGCCTGGGAGGTCAAGGCTTGTAGTGAGTCATGGTCATGCCACTGCACTGCAGCCTGGGCGACAGGACGAGACCCTACCTCAAAAAGAAAAAGCCGTGGAGTGCTCTCTGCTATCTTCCACCTACCTGTGGGGTCTCCCATGGTGTCACTGTCTACCCTTGCACTCAGCAGCCTGGACCTTGTCCTTCCCCTTCCAG
Seq C2 exon
GGCAGCAGCAACAGAACTGAATTCCTGGTCAGTGGTCCTGGGTTCTCTGCAGCGTGAGGGACTCAGCCCTGGGGCCGAAGAGGTGGGGGTGGCTGCCCTGCAGTTGCCCAGGGCCTATAACCACTACAGCCAGGGCTCAGACCTGGCCCTGCTGCAGCTCGCCCACCCCACGACCCACACACCCCTCTGCCTGCCCCAGCCCGCCCATCGCTTCCCCTTTGGAGCCTCCTGCTGGGCCACTGGCTGGGATCAGGACACCAGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151006-PRSS53:NM_001039503:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.3=76.4)
A:
NA
C2:
PF0008921=Trypsin=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGTGAGGAGGCAAGGAG
R:
TCACTGGTGTCCTGATCCCAG
Band lengths:
352-990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)