BtaINT0118791 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27453218-27453776:-
Coord C1 exon
chr25:27453511-27453776
Coord A exon
chr25:27453373-27453510
Coord C2 exon
chr25:27453218-27453372
Length
138 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AACCCCCTCTCTTTTGCCAGCTC
3' ss Score
8.17
Exon sequences
Seq C1 exon
GGAGGCAATGACAGAACTGAACTCCTGGTCAGTTGTCCTGGGTTCTCTGCAGCATGAAGGTCTGAGCCCAGGGGCTGAGGAGGTGGGGGTAACGGCTCTGCAGCTGCCCAGGGCCTACAACCACTACAGCCAGGGCTCAGACCTGGCCCTCCTCCGACTCGCCCACCCCATAGCCCACACACCCCTCTGCTTGCCCCGACCTGCCCATCGCTTCCCCTTTGGGACTTCCTGCTGGGCCACCGGCTGGTATCAGCACACCAATGATG
Seq A exon
GTAAGTGCTGGCCTGAAGCCCAGAGAGGTACTTGGCTTGCCCAAGGTCACACAACCTCAGCTGCTAACTGTTCCCATTCCCAGTCTCCCTTGCTCCTCTGGGCCCAGACTTCGGCCCCAACCCCCTCTCTTTTGCCAG
Seq C2 exon
CTCCCAGGACCCTACGGAATCTGCGCCTGCGTCTAATCAGCCGTCCCACGTGTAACTGTCTCTACAACCGCCTGCACCAGCGGTCACTGGCCAGTCCGGCCCGGCCTGGGATGCTGTGTGGGGGTCCCCAGCCTGGGATGCAGGGGCCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.327
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCATGAAGGTCTGAGC
R:
ATTAGACGCAGGCGCAGATTC
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]