MmuINT0127548 @ mm10
Intron Retention
Gene
ENSMUSG00000044139 | Prss53
Description
protease, serine 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:127888646-127889199:-
Coord C1 exon
chr7:127888934-127889199
Coord A exon
chr7:127888801-127888933
Coord C2 exon
chr7:127888646-127888800
Length
133 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AACATTCTCTCCTTTGCCAGTTT
3' ss Score
7.75
Exon sequences
Seq C1 exon
GATGGCCACAGCAGAACTGAGCTCCTGGTCCGTGGTCCTGGGTTCTCTCAAGCAGGAGGGGCAGAGCCCGGGGGCTGAGGAGGTGGGAGTTGCTGCCCTGCAGTTGCCCAAGGCCTATAACCACTATAGCCAGGGATCAGATCTGGCCCTGCTCCAGCTCACCCACCCCACCGTTCAGACAACCCTCTGCTTGCCCCAACCCACCTACCACTTCCCCTTTGGAGCTTCTTGCTGGGCCACTGGCTGGGACCAGAACACCAGTGATG
Seq A exon
GTAAGTACTATCCTAGACAGAAGTCTAGAGAGGCACTTTGCTTGCCCAGGCTCAAACAGAATCAGTTCCTGACTGTGAGAGGCCCCTGCTCCCATTGTTCCAGGGCTAGACTCAACATTCTCTCCTTTGCCAG
Seq C2 exon
TTTCCAGAACCCTACGGAATCTGCGCCTCCGTCTCATCAGCCGCCCCACTTGTAACTGTCTCTACAATCGGTTGCACCAGAGGTTGCTGTCCAACCCAGCAAGACCTGGGATGCTCTGTGGGGGTGCACAGCCTGGGGAACAGGGGCCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139:ENSMUST00000121394:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGTGGGAGTTGCT
R:
GAGACAGTTACAAGTGGGGCG
Band lengths:
254-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types