RnoINT0118800 @ rn6
Intron Retention
Gene
ENSRNOG00000026040 | Prss53
Description
serine protease 53 [Source:RGD Symbol;Acc:1566127]
Coordinates
chr1:199334011-199334548:-
Coord C1 exon
chr1:199334283-199334548
Coord A exon
chr1:199334166-199334282
Coord C2 exon
chr1:199334011-199334165
Length
117 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AACATTATCTCCTTTGCCAGTTT
3' ss Score
6.1
Exon sequences
Seq C1 exon
GATGGCCACAGCAGAACTGAGCTCCTGGTCCGTGGTCCTGGGTTCTCTCAAGCAGGAGGGGCTGAGCCCGGGGGCTGAGGAGGTGGGAGTTGCTGCCCTACAGCTGCCCAAGGCCTATAACCACTATAGCCAGGGATCAGACCTGGCTCTGCTCCAGCTTACCCACCCCATAGTTCACACAACCCTCTGCTTGCCCCAACCCACCCACCACTTCCCCTTTGGAGCTTCTTGCTGGGCCACTGGCTGGGACCAGAACACCAGTGATG
Seq A exon
GTAAGTACTGTCCTAGACATAAGTCTAGAGAGTCACAAACAGGATCAGTTCTAACTGTGCTAGCCCTCTGCTCCCACTGTGTGTCAGAGCTAGACTCAACATTATCTCCTTTGCCAG
Seq C2 exon
TTTCCAGGACCCTACGGAATCTGCGCCTTCGCCTCATCAGCCGCCCCACCTGTAACTGTCTCTACAATCGGTTGCACCAGAGGCTGCTGGCCAATCCAGCAAGATCTGGGATGTTGTGTGGGGGTGCACAGCCTGGGGTACAGGGACCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026040:ENSRNOT00000035672:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGACCTGGCTCTGCTCC
R:
CCCCACACAACATCCCAGATC
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]