BtaINT0118792 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031551 | PRSS53
Description
protease, serine, 53 [Source:HGNC Symbol;Acc:HGNC:34407]
Coordinates
chr25:27452840-27453372:-
Coord C1 exon
chr25:27453218-27453372
Coord A exon
chr25:27453060-27453217
Coord C2 exon
chr25:27452840-27453059
Length
158 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
GACAACACTGCCTGCTCCAGGGA
3' ss Score
4.85
Exon sequences
Seq C1 exon
CTCCCAGGACCCTACGGAATCTGCGCCTGCGTCTAATCAGCCGTCCCACGTGTAACTGTCTCTACAACCGCCTGCACCAGCGGTCACTGGCCAGTCCGGCCCGGCCTGGGATGCTGTGTGGGGGTCCCCAGCCTGGGATGCAGGGGCCCTGTCAG
Seq A exon
GTCTGAGGAGGAGGACAGGGGAAGGGAACAGAAGGGAAGGGGGCCTGCCATAGGCCAGACACTCAATCCACAGGGATGGATGGAAGGGCGGCCCATGGAGGGTGTCCACCCAGGGCTGGGGCTCAGATGTCTGTCTCTGACAACACTGCCTGCTCCAG
Seq C2 exon
GGAGATTCCGGCGGTCCTGTGCTGTGCCGTGAACCTGATGGACACTGGGTTCAAGCAGGGATCATCAGTTTTGCATCAAGCTGTGCCCGGGAAGACACTCCTGTCCTGCTGACTGATATGGCTGCTCACAGCTCCTGGCTGCAGGCTCGAGCTCAGGGGGCAGCCTTCCTAACCCAGAACCCAGAGACCCCGGAGATTAGTGACGAGGACAGCTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031551:ENSBTAT00000044725:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.0=62.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCAGCCGTCCCACGTGTA
R:
GCAGCCATATCAGTCAGCAGG
Band lengths:
247-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]