MmuINT0127549 @ mm9
Intron Retention
Gene
ENSMUSG00000044139 | Prss53
Description
protease, serine, 53 [Source:MGI Symbol;Acc:MGI:2652890]
Coordinates
chr7:135031809-135032314:-
Coord C1 exon
chr7:135032160-135032314
Coord A exon
chr7:135032029-135032159
Coord C2 exon
chr7:135031809-135032028
Length
131 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
GGCTCTTTTTCTGGCTCCAGGGA
3' ss Score
7.67
Exon sequences
Seq C1 exon
TTTCCAGAACCCTACGGAATCTGCGCCTCCGTCTCATCAGCCGCCCCACTTGTAACTGTCTCTACAATCGGTTGCACCAGAGGTTGCTGTCCAACCCAGCAAGACCTGGGATGCTCTGTGGGGGTGCACAGCCTGGGGAACAGGGGCCCTGCCAG
Seq A exon
GTCTGATGAATACCGGGGGGGGGGACGCAGGGAGGTCTAGTCTAGGGCTGAGGGCCCAGTCCTTAGAGGAGGGTATGGGGCTTGTATTGGGGCTCAGGTGGCTCTGCTTTTGGCTCTTTTTCTGGCTCCAG
Seq C2 exon
GGAGATTCTGGGGGACCTGTGATGTGCCGTGAGCCTGATGGACACTGGGTCCAGGTTGGAATCATTAGTTTCACATCAAAATGTGCCCAAGAGGACACCCCTGTGCTGTTGACTGACATGGCAGTACACAGTTCATGGCTGCAGGCCCATGTTCACGAGGCAGCTTTCTTGGTGCAGGCCCCAGGAGTTGTGAAGATGAGCGACGAGAACAGCTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044139-Prss53:NM_001081268:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.0=62.2)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCCACTTGTAACTGTCTC
R:
GCCATGAACTGTGTACTGCCA
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: