RnoINT0118801 @ rn6
Intron Retention
Gene
ENSRNOG00000026040 | Prss53
Description
serine protease 53 [Source:RGD Symbol;Acc:1566127]
Coordinates
chr1:199333644-199334165:-
Coord C1 exon
chr1:199334011-199334165
Coord A exon
chr1:199333864-199334010
Coord C2 exon
chr1:199333644-199333863
Length
147 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
GGCTCTTTTCCTGGCTCCAGGGA
3' ss Score
7.57
Exon sequences
Seq C1 exon
TTTCCAGGACCCTACGGAATCTGCGCCTTCGCCTCATCAGCCGCCCCACCTGTAACTGTCTCTACAATCGGTTGCACCAGAGGCTGCTGGCCAATCCAGCAAGATCTGGGATGTTGTGTGGGGGTGCACAGCCTGGGGTACAGGGACCCTGCCAG
Seq A exon
GTTTGATAAGGAATACAGGGGAAGGGAGGGTCTGGTCTAGGGCTGAGGGCCCAATCCTCAGAGAAGTTTAATAGAGGTACAGCCAGCGGGCATCTGGCCAGTATTGGGCTCAGGTGTCTCTACTTTTGGCTCTTTTCCTGGCTCCAG
Seq C2 exon
GGAGATTCTGGGGGACCTGTGATGTGCCGTGAACCTGATGGACACTGGGTCCAAGTTGGGATCATTAGTTTCACATCAAATTGTGCCCAAGAGGACACCCCTGTGCTGCTGACTGACATGGCGGCACACAGTTCGTGGCTGCAGGCCCATGTTGACAGAGCAGCTTTCTTGGTGCAGGACCCAGGAGTCGTGAAGATGAGTGACGAGAACAGCTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026040:ENSRNOT00000035672:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.0=62.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAATCCAGCAAGATCTG
R:
CTGCACCAAGAAAGCTGCTCT
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]